| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TACAATCAGA TGTAACTGGT TTGGAATCCA TTTGGTTTGG (2)
| 11.4 | 0.0114 |
| Cb medulloblastoma | TACAGTATTT (2) TTTGGTTTGG (2)
| 6.9 | 0.0069 |
| P8 GC+1d culture | TACAGTATTT (2) TGTAACTGGT TTGGAATCCA TTTGGTTTGG (2)
| 12.5 | 0.0125 |
| P8 GC+SHH+1d culture | TACAATCAGA TGTAACTGGT TTGGAATCCA TTTGGTTTGG (2)
| 7 | 0.007 |
| 3T3 fibroblasts | TGTAACTGGT
| 7 | 0.007 |
| E15 cortex | TGTAACTGGT
| 14.8 | 0.0148 |
| P1 cortex | TACAATCAGA TGTAACTGGT
| 18.1 | 0.0181 |
| Hypothalamus | TACAATCAGA TACAGTATTT (2) TTGGAATCCA TTTGGTTTGG (2)
| 18 | 0.018 |
| E12.5 retina | TGTAACTGGT
| 7.5 | 0.0075 |
| E14.5 retina | TACAGTATTT (2) TTTGGTTTGG (2)
| 5.4 | 0.0054 |
| E16.5 retina | TTTGGTTTGG (2)
| 1.8 | 0.0018 |
| E18.5 retina | TACAGTATTT (2) TGTAACTGGT
| 3.6 | 0.0036 |
| P0.5 retina | TACAATCAGA TACAGTATTT (2) TCTCCATCCT TGTAACTGGT
| 13.8 | 0.0138 |
| P2.5 retina | TACAGTATTT (2) TCTCCATCCT TGTAACTGGT
| 5.4 | 0.0054 |
| P4.5 retina | TACAGTATTT (2) TCTCCATCCT TGTAACTGGT TTGGAATCCA
| 8 | 0.008 |
| P6.5 retina | TACAGTATTT (2) TTTGGTTTGG (2)
| 3.4 | 0.0034 |
| P10.5 crx- retina | TACAGTATTT (2) TCTCCATCCT TGTAACTGGT TTGGAATCCA
| 14.9 | 0.0149 |
| P10.5 crx+ retina | TACAGTATTT (2) TGTAACTGGT TTGGAATCCA TTTGGTTTGG (2)
| 9.5 | 0.0095 |
| ONL | TACAGTATTT (2) TTGGAATCCA
| 3.8 | 0.0038 |