Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.221041	E130008O17Rik	RIKEN cDNA E130008O17 gene	1		320518
Mm.221041	R3hdm	R3H domain (binds single-stranded nucleic acids)	1		226412
Human Homolog	R3HDM[R3H domain (binds single-stranded nucleic acids) containing]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTCCCTCC (2) AAGAAGAAGG (2) GGAAGGGTTA (2) 8.1 0.0081 Cb medulloblastoma AACTCCCTCC (2) AAGAAGAAGG (2) CCTGCCCTCT 6.9 0.0069 P8 GC+1d culture AAATAAAACT (2) AACTCCCTCC (2) AAGAAGAAGG (2) AGGATACTGA (3) CCTGCCCTCT GGAAGGGTTA (2) TCAAAACTAT (3) TGATTATGTG (2) 15.9 0.0159 P8 GC+SHH+1d culture AAATAAAACT (2) AACTCCCTCC (2) AAGAAGAAGG (2) AGGATACTGA (3) GGAAGGGTTA (2) TCAAAACTAT (3) TGATTATGTG (2) TTAAGGAAGA (2) 16.5 0.0165 3T3 fibroblasts AACTCCCTCC (2) 3.5 0.0035 E15 cortex CCTGCCCTCT GGAAGGGTTA (2) 14.8 0.0148 P1 cortex AACTCCCTCC (2) GGAAGGGTTA (2) TCAAAACTAT (3) 18.1 0.0181 Hypothalamus AACTCCCTCC (2) AGGATACTGA (3) TCAAAACTAT (3) TGATTATGTG (2) TTAAGGAAGA (2) 16.2 0.0162 E12.5 retina AACTCCCTCC (2) AGGATACTGA (3) TGATTATGTG (2) 5.7 0.0057 E14.5 retina AACTCCCTCC (2) GGAAGGGTTA (2) TCAAAACTAT (3) 7.2 0.0072 E16.5 retina AAATAAAACT (2) AACTCCCTCC (2) AGGATACTGA (3) GGAAGGGTTA (2) TCAAAACTAT (3) TTAAGGAAGA (2) 14.4 0.0144 E18.5 retina AACTCCCTCC (2) TTAAGGAAGA (2) 3.6 0.0036 P0.5 retina AACTCCCTCC (2) CCTGCCCTCT GGAAGGGTTA (2) TCAAAACTAT (3) TGATTATGTG (2) 17.8 0.0178 P2.5 retina AACTCCCTCC (2) AAGAAGAAGG (2) AGGATACTGA (3) TGATTATGTG (2) 7.2 0.0072 P4.5 retina AAATAAAACT (2) AACTCCCTCC (2) 15.8 0.0158 P6.5 retina AAATAAAACT (2) AACTCCCTCC (2) 3.4 0.0034 P10.5 crx- retina AACTCCCTCC (2) CCTGCCCTCT GGAAGGGTTA (2) TCAAAACTAT (3) TTAAGGAAGA (2) 18.7 0.0187 P10.5 crx+ retina AACTCCCTCC (2) AGGATACTGA (3) 5.7 0.0057 Adult retinal AACTCCCTCC (2) GGAAGGGTTA (2) 9.3 0.0093 ONL AACTCCCTCC (2) AAGAAGAAGG (2) 5.7 0.0057