Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22718	Xbp1	X-box binding protein 1	11	11 3.0 cM	22433
Gene Ontology	DNA binding | extracellular space | nucleus | regulation of transcription, DNA-dependent
Human Homolog	XBP1[X-box binding protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 159 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATCAAGA (2) CTCCTGAGTG GAAAGGAAAA GAGGAGCCCC GGAACTCTGG TGTAACCAGG TTTTCAATGT (2) 71.8 0.0718 Cb medulloblastoma AAGATCAAGA (2) GAGGAGCCCC GGAACTCTGG GGTTAAATCT TTTACACCAA TTTTCAATGT (2) 43.8 0.0438 P8 GC+1d culture AAGATCAAGA (2) AATGGCCCTT GACACCAGAA GCACCGAACG GGAACTCTGG TCTTCTCCAC (2) TGGTTTAGGA TGTAACCAGG TTTTCAATGT (2) 44.4 0.0444 P8 GC+SHH+1d culture AAGATCAAGA (2) AATGGCCCTT CTAAATGAGA (2) CTCCTGAGTG GACACCAGAA GAGGAGCCCC GCACCGAACG GGAACTCTGG TAATTCCAGC TCTTCTCCAC (2) TTTTTCATTG 41.1 0.0411 3T3 fibroblasts AAAGCTGGAG (2) AAGATCAAGA (2) GGATCATTGA 66.6 0.0666 E15 cortex AAGATCAAGA (2) GGAACTCTGG GGATCATTGA GGTTAAATCT 113.7 0.1137 P1 cortex AAGATCAAGA (2) AATGGCCCTT GACTCTGCCA GCACCGAACG 77.1 0.0771 Hypothalamus AAAGCTGGAG (2) AAGATCAAGA (2) CTAAATGAGA (2) GAGGAGCCCC GGAACTCTGG GGATCATTGA TCTTCTCCAC (2) TGAGGGGGGA 45.1 0.0451 E12.5 retina AAAGCTGGAG (2) AAGATCAAGA (2) AATGGCCCTT CTAAATGAGA (2) CTCCTGAGTG GACTCTGCCA GGAACTCTGG TAATTCCAGC TGTAACCAGG TGTTCAAATG 99.7 0.0997 E14.5 retina AAGATCAAGA (2) GAAAGGAAAA GACTCTGCCA GAGGAGCCCC GGAACTCTGG GGATTCATTG TAATTCCAGC TGGTTTAGGA TGTAACCAGG TTTTCAATGT (2) TTTTTCATTG 72.7 0.0727 E16.5 retina AAGATCAAGA (2) CTCCTGAGTG GACTCTGCCA GAGGAGCCCC GGAACTCTGG TAATTCCAGC TGTAACCAGG TTTACACCAA TTTTCAATGT (2) TTTTTCATTG 72.2 0.0722 E18.5 retina AAGATCAAGA (2) GAAAGGAAAA GACACCAGAA GACTCTGCCA GAGGAGCCCC GGAACTCTGG TAATTCCAGC 43.6 0.0436 P0.5 retina AAGATCAAGA (2) GACACCAGAA GACTCTGCCA GGAACTCTGG TCTTCTCCAC (2) TGTAACCAGG TTTACACCAA 61 0.061 P2.5 retina AAAGCTGGAG (2) AAGATCAAGA (2) AATGGCCCTT CTCCTGAGTG GACTCTGCCA GGAACTCTGG GGATTCATTG TAATTCCAGC TGTAACCAGG TTTACACCAA 61.9 0.0619 P4.5 retina AAGATCAAGA (2) CTCCTGAGTG GACACCAGAA GACTCTGCCA GGAACTCTGG GGATCATTGA TGTAACCAGG TTTTCAATGT (2) 59.4 0.0594 P6.5 retina AAAGCTGGAG (2) AAGATCAAGA (2) AATGGCCCTT CTCCTGAGTG GACTCTGCCA GAGGAGCCCC GGAACTCTGG GGATCATTGA TCTTCTCCAC (2) TGAGGGGGGA TGTAACCAGG TTTACACCAA 46.8 0.0468 P10.5 crx- retina AAGATCAAGA (2) AATGGCCCTT CTCCTGAGTG GAGGAGCCCC GGAACTCTGG GGATTCATTG TGTAACCAGG TTTACACCAA TTTTCAATGT (2) TTTTTTCAAA (2) 31.8 0.0318 P10.5 crx+ retina AAGATCAAGA (2) AATGGCCCTT GACTCTGCCA GAGGAGCCCC GGAACTCTGG TGTAACCAGG 26.8 0.0268 Adult retinal AAAGCTGGAG (2) AAGATCAAGA (2) AATGGCCCTT GAAAGGAAAA GACTCTGCCA GGAACTCTGG GGATTCATTG TCTTCTCCAC (2) TTTTTCATTG TTTTTTCAAA (2) 22.6 0.0226 ONL AAGATCAAGA (2) CTCCTGAGTG GAGGAGCCCC GGAACTCTGG TGGTTTAGGA TTTTTCATTG 17.1 0.0171