Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234266	4833414L08Rik	RIKEN cDNA 4833414L08 gene	15		74599
Mm.234266	Sdc2	syndecan 2	15	15 12.4 cM	15529
Gene Ontology	cytoskeletal protein binding | integral to membrane | membrane
Human Homolog	SDC2[syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 72 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTTGAGAC CGGAAGAAAG (2) GAATTGATTT GCGGGGGGGG (2) TTAAAAGGAA (3) 11.3 0.0113 Cb medulloblastoma CCGAAAGTAA (2) GCCTAAAAAA GCGGGGGGGG (2) TAAAAAAATA 16.1 0.0161 P8 GC+1d culture ATGTTGAGAC CATTTAAAAT (2) CCGAAAGTAA (2) CGGAAGAAAG (2) GCCTAATATT (2) GTTTGGGGAT (2) TTAAAAGGAA (3) 10.1 0.0101 P8 GC+SHH+1d culture ATGTTGAGAC CATTTAAAAT (2) GAATTGATTT 7.1 0.0071 3T3 fibroblasts CCGAAAGTAA (2) 7 0.007 P1 cortex ATGTTGAGAC TTAAAAGGAA (3) 13.6 0.0136 Hypothalamus ATGTTGAGAC CCGAAAGTAA (2) CGGAAGAAAG (2) GCCTAATATT (2) 16.2 0.0162 E12.5 retina ATGTTGAGAC CATTTAAAAT (2) CCGAAAGTAA (2) GCCTAAAAAA GCGGGGGGGG (2) 18.9 0.0189 E14.5 retina ATGTTGAGAC CCGAAAGTAA (2) TTAAAAGGAA (3) 16.4 0.0164 E16.5 retina ATGTTGAGAC GCCTAATATT (2) TTAAAAGGAA (3) 18.1 0.0181 E18.5 retina ATGTTGAGAC CCGAAAGTAA (2) GCCTAAAAAA GCCTAATATT (2) GTTTGGGGAT (2) 23.6 0.0236 P0.5 retina ATGTTGAGAC CCGAAAGTAA (2) GCCTAATATT (2) TAAAAAAATA 15.8 0.0158 P2.5 retina ATGTTGAGAC CCGAAAGTAA (2) TAAAAAAATA 8.8 0.0088 P4.5 retina ATGTTGAGAC CCGAAAGTAA (2) CGGAAGAAAG (2) TAAAAAAATA 11.9 0.0119 P6.5 retina ATGTTGAGAC GAATTGATTT GCCTAATATT (2) GCGGGGGGGG (2) GTTTGGGGAT (2) TAAAAAAATA 16.8 0.0168 P10.5 crx- retina ATGTTGAGAC CATTTAAAAT (2) 9.3 0.0093 P10.5 crx+ retina ATGTTGAGAC GCGGGGGGGG (2) GTTTGGGGAT (2) TTAAAAGGAA (3) 11.5 0.0115 Adult retinal ATGTTGAGAC CGGAAGAAAG (2) TAAAAAAATA 7.5 0.0075 ONL ATGTTGAGAC CCGAAAGTAA (2) GAATTGATTT TTAAAAGGAA (3) 9.5 0.0095