| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5)
| 305 | 0.305 |
| Cb medulloblastoma | AAAAAAAAAA (2) ATAGCTTTCT (4) CAGACAAGCT GGGAAAAAAA (5)
| 1059.1 | 1.0591 |
| P8 GC+1d culture | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) CAGACAAGCT CAGCCAAGCT GGGAAAAAAA (5) TTACCCTGGG
| 374.3 | 0.3743 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ATAGCTTTCT (4) GCCTTCCTCA (3) GGGAAAAAAA (5) TTCCCGAAGT
| 401.7 | 0.4017 |
| 3T3 fibroblasts | AAAAAAAAAA (2) ATAGCTTTCT (4) CAGCCAAGCT GCTGAGGCAG (2)
| 45.5 | 0.0455 |
| E15 cortex | AAAAAAAAAA (2) AGGCCAAGGA ATAGCTTTCT (4)
| 227.6 | 0.2276 |
| P1 cortex | AAAAAAAAAA (2) ATAGCTTTCT (4) GGGAAAAAAA (5)
| 299.9 | 0.2999 |
| Hypothalamus | AAAAAAAAAA (2) ATAGCTTTCT (4) CAGACAAGCT GCCTTCCTCA (3) GGGAAAAAAA (5)
| 269.9 | 0.2699 |
| E12.5 retina | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) GCTGAGGCAG (2) TTCCCGAAGT
| 161.5 | 0.1615 |
| E14.5 retina | AAAAAAAAAA (2) ATAGCTTTCT (4) GGGAAAAAAA (5)
| 125.7 | 0.1257 |
| E16.5 retina | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5)
| 96 | 0.096 |
| E18.5 retina | AAAAAAAAAA (2) AATACTTTAA AGGCCAAGGA ATAGCTTTCT (4) GGGAAAAAAA (5) TTACCCTGGG
| 401.9 | 0.4019 |
| P0.5 retina | AAAAAAAAAA (2) AGGCCAAGGA ATAGCTTTCT (4) GGGAAAAAAA (5) TTACCCTGGG
| 155.1 | 0.1551 |
| P2.5 retina | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5)
| 378.4 | 0.3784 |
| P4.5 retina | AAAAAAAAAA (2) AATACTTTAA ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5)
| 356.7 | 0.3567 |
| P6.5 retina | AAAAAAAAAA (2) ATAGCTTTCT (4) GGGAAAAAAA (5)
| 303.5 | 0.3035 |
| P10.5 crx- retina | AAAAAAAAAA (2) ATAGCTTTCT (4) GCCTTCCTCA (3) GCTGAGGCAG (2) GGGAAAAAAA (5)
| 104.1 | 0.1041 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ATAGCTTTCT (4) GGGAAAAAAA (5)
| 159.6 | 0.1596 |
| Adult retinal | AAAAAAAAAA (2) ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5) TTACCCTGGG
| 113.1 | 0.1131 |
| ONL | AAAAAAAAAA (2) ATAGCTTTCT (4) GCTGAGGCAG (2) GGGAAAAAAA (5) TTACCCTGGG
| 149.3 | 0.1493 |