| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 208.8 | 0.2088 |
| Cb medulloblastoma | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA TGAAGGTGGA (2)
| 807 | 0.807 |
| P8 GC+1d culture | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA
| 210 | 0.21 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 279.9 | 0.2799 |
| 3T3 fibroblasts | AAAAAAAAAA (2) CCTTCTGCCT (4) TGAAGGTGGA (2)
| 35 | 0.035 |
| E15 cortex | AAAAAAAAAA (2) GCCCTGGGGA
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2) CCTTCTGCCT (4) TGAAGGTGGA (2)
| 263.5 | 0.2635 |
| Hypothalamus | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 125 | 0.125 |
| E12.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 142.7 | 0.1427 |
| E14.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 98.3 | 0.0983 |
| E16.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 47.1 | 0.0471 |
| E18.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA
| 387.4 | 0.3874 |
| P0.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4) TGAAGGTGGA (2)
| 123.7 | 0.1237 |
| P2.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA
| 332.7 | 0.3327 |
| P4.5 retina | AAAAAAAAAA (2) TGAAGGTGGA (2)
| 285.3 | 0.2853 |
| P6.5 retina | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 270.1 | 0.2701 |
| P10.5 crx- retina | AAAAAAAAAA (2) CCTTCTGCCT (4)
| 46.5 | 0.0465 |
| P10.5 crx+ retina | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA
| 99.9 | 0.0999 |
| Adult retinal | AAAAAAAAAA (2) CCTTCTGCCT (4) GCCCTGGGGA
| 64.9 | 0.0649 |
| ONL | AAAAAAAAAA (2)
| 103.4 | 0.1034 |