| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGAAAGCCCC (3) CTAAATATCT (2) TTTTAAAAAA (2)
| 4.8 | 0.0048 |
| Cb medulloblastoma | GGCTTTACAA (2) TTTTAAAAAA (2) TTTTAAAAGT (2)
| 16.1 | 0.0161 |
| P8 GC+1d culture | CTAAATATCT (2) GGCTTTACAA (2) TGGCTTTCTG TTTTAAAAAA (2)
| 12.6 | 0.0126 |
| P8 GC+SHH+1d culture | AGAAAGCCCC (3) CTAAATATCT (2) GGCTTTACAA (2) TTTTAAAAAA (2)
| 17.6 | 0.0176 |
| 3T3 fibroblasts | TGGCTTTCTG
| 3.5 | 0.0035 |
| E15 cortex | GGCTTTACAA (2)
| 4.9 | 0.0049 |
| P1 cortex | TTTTAAAAAA (2) TTTTAAAAGT (2)
| 9 | 0.009 |
| Hypothalamus | TAAAAAGCAA TGGCTTTCTG TTTTAAAAAA (2)
| 5.4 | 0.0054 |
| E12.5 retina | TTTTAAAAAA (2)
| 1.9 | 0.0019 |
| E14.5 retina | TTTTAAAAAA (2)
| 3.6 | 0.0036 |
| E16.5 retina | AATCCAATAG
| 1.8 | 0.0018 |
| E18.5 retina | AGAAAGCCCC (3) GGCTTTACAA (2) TAAAAAGCAA TTTTAAAAAA (2) TTTTAAAAGT (2)
| 16.3 | 0.0163 |
| P2.5 retina | AATCCAATAG CTAAATATCT (2) TAAAAAGCAA TTTTAAAAAA (2)
| 10.7 | 0.0107 |
| P4.5 retina | CTAAATATCT (2) TTTTAAAAAA (2) TTTTAAAAGT (2)
| 10 | 0.01 |
| P6.5 retina | TTTTAAAAAA (2) TTTTAAAAGT (2)
| 8.3 | 0.0083 |
| P10.5 crx- retina | AATCCAATAG TTTTAAAAAA (2)
| 3.8 | 0.0038 |
| P10.5 crx+ retina | GGCTTTACAA (2) TAAAAAGCAA TTTTAAAAAA (2) TTTTAAAAGT (2)
| 7.6 | 0.0076 |
| Adult retinal | CTAAATATCT (2)
| 1.9 | 0.0019 |
| ONL | TTTTAAAAAA (2)
| 3.8 | 0.0038 |