Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.242865	D130076G13Rik	RIKEN cDNA D130076G13 gene	13		105185
Mm.242865	Papd4	PAP associated domain containing 4	13		100715
Gene Ontology	nucleic acid binding | transferase activity
Human Homolog	PAPD4[PAP associated domain containing 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACAAAAAAA (2) ACTTTAATGT GTTTATTTTT TAATGTCCCT (3) TTTTATTTTT (3) 13 0.013 Cb medulloblastoma AACAAAAAAA (2) CACAGCTCTG (20) GTTTATTTTT TTTTATTTTT (3) 16.1 0.0161 P8 GC+1d culture AACAAAAAAA (2) GTTTATTTTT TAATGTCCCT (3) TAGCCTAGGC (2) TTTTATTTTT (3) 13.6 0.0136 P8 GC+SHH+1d culture AAAGTAGTAG (2) AACAAAAAAA (2) ACTTTAATGT GTTTATTTTT TAATGTCCCT (3) TAGCCTAGGC (2) TTTTATTTTT (3) 21 0.021 E15 cortex AACAAAAAAA (2) 4.9 0.0049 P1 cortex CACAGCTCTG (20) TAATGTCCCT (3) 22.7 0.0227 Hypothalamus AACAAAAAAA (2) ATAGGAAACA (2) TAATGTCCCT (3) TTTTATTTTT (3) 10.8 0.0108 E12.5 retina AACAAAAAAA (2) GCAGAGATTG (4) GTTTATTTTT TAATGTCCCT (3) TTTTATTTTT (3) 17 0.017 E14.5 retina AAAGTAGTAG (2) AACAAAAAAA (2) GTTTATTTTT TAATGTCCCT (3) TTTTATTTTT (3) 12.6 0.0126 E16.5 retina ATAGGAAACA (2) GTTTATTTTT TAGCCTAGGC (2) TTTTATTTTT (3) 12.6 0.0126 E18.5 retina AACAAAAAAA (2) TTTTATTTTT (3) 18.2 0.0182 P0.5 retina AACAAAAAAA (2) GTTTATTTTT TAGCCTAGGC (2) TTTTATTTTT (3) 17.7 0.0177 P2.5 retina AACAAAAAAA (2) ACTTTAATGT GTTTATTTTT TAATGTCCCT (3) TTTTATTTTT (3) 14.2 0.0142 P4.5 retina AACAAAAAAA (2) GCAGAGATTG (4) TAATGTCCCT (3) TAGCCTAGGC (2) TTTTATTTTT (3) 16 0.016 P6.5 retina AAAGTAGTAG (2) GTTTATTTTT TAGCCTAGGC (2) TTTTATTTTT (3) 6.8 0.0068 P10.5 crx- retina AACAAAAAAA (2) ATAGGAAACA (2) TAATGTCCCT (3) TTTTATTTTT (3) 13 0.013 P10.5 crx+ retina AACAAAAAAA (2) TAATGTCCCT (3) TTTTATTTTT (3) 13.5 0.0135 Adult retinal CACAGCTCTG (20) TAATGTCCCT (3) TAGCCTAGGC (2) 35.2 0.0352 ONL TAATGTCCCT (3) TAGCCTAGGC (2) TTTTATTTTT (3) 22.9 0.0229