| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGAAGGAAAA (4) ATGATAATGG (3) GAATGTAGAG GCACCTCCCA (2)
| 9.7 | 0.0097 |
| P8 GC+1d culture | ATGATAATGG (3) GCACCTCCCA (2) TCTCTCTACA (2) TTTACATACA
| 6.7 | 0.0067 |
| P8 GC+SHH+1d culture | ATGATAATGG (3) CTAAAGAAAC (2) GAATGTAGAG
| 5.9 | 0.0059 |
| 3T3 fibroblasts | CCACCTCCCA GCACCTCCCA (2) TGGCGCTTGT
| 14 | 0.014 |
| E15 cortex | ATGATAATGG (3)
| 4.9 | 0.0049 |
| P1 cortex | ATGATAATGG (3) CTAAAGAAAC (2)
| 27.3 | 0.0273 |
| Hypothalamus | ATGATAATGG (3) CCACCTCCCA GAATGTAGAG
| 23.5 | 0.0235 |
| E12.5 retina | ATGATAATGG (3) GAATGTAGAG TCTCTCTACA (2)
| 5.7 | 0.0057 |
| E14.5 retina | ATGATAATGG (3) GCACCTCCCA (2)
| 21.8 | 0.0218 |
| E16.5 retina | ATGATAATGG (3) CTAAAGAAAC (2)
| 23.5 | 0.0235 |
| E18.5 retina | ATGATAATGG (3) CTAAAGAAAC (2) TTTACATACA
| 18.2 | 0.0182 |
| P0.5 retina | ATGATAATGG (3) CTAAAGAAAC (2)
| 9.9 | 0.0099 |
| P2.5 retina | ATGATAATGG (3) GCACCTCCCA (2) TCTCTCTACA (2)
| 10.6 | 0.0106 |
| P4.5 retina | ATGATAATGG (3)
| 9.9 | 0.0099 |
| P6.5 retina | AGAAGGAAAA (4) ATGATAATGG (3) TCTCTCTACA (2)
| 15 | 0.015 |
| P10.5 crx- retina | ATGATAATGG (3) TGGCGCTTGT
| 3.8 | 0.0038 |
| P10.5 crx+ retina | ATGATAATGG (3) CCACCTCCCA
| 5.7 | 0.0057 |
| Adult retinal | ATGATAATGG (3) TGGCGCTTGT
| 11.2 | 0.0112 |
| ONL | ATGATAATGG (3) GCACCTCCCA (2)
| 13.4 | 0.0134 |