| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AACCGTGAAT
| 223.5 | 0.2235 |
| Cb medulloblastoma | AAAAAAAAAA (2) AACCGTGAAT GGGGCTGGGG (2) TCAGACATTC
| 809.3 | 0.8093 |
| P8 GC+1d culture | AAAAAAAAAA (2) AACCGTGAAT AATGTTAATT GAAGGTGCTT GAAGGTGTTT (3) GGGGCTGGGG (2) TCAGACATTC
| 225.8 | 0.2258 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AACCGTGAAT AATGTTAATT GAAGGTGCTT GGAAAGGGTG (2) GGGGCTGGGG (2)
| 307.8 | 0.3078 |
| 3T3 fibroblasts | AAAAAAAAAA (2) AACCGTGAAT GTGGCACGCA
| 59.5 | 0.0595 |
| E15 cortex | AAAAAAAAAA (2) AACCGTGAAT GAAGGTGTTT (3) GTGGCACGCA
| 262.2 | 0.2622 |
| P1 cortex | AAAAAAAAAA (2) AACCGTGAAT GAAGGTGCTT GGAAAGGGTG (2)
| 277.1 | 0.2771 |
| Hypothalamus | AAAAAAAAAA (2) GGGGCTGGGG (2)
| 125 | 0.125 |
| E12.5 retina | AAAAAAAAAA (2) AACCGTGAAT CACTCATTCA GAAGGTGTTT (3)
| 163.4 | 0.1634 |
| E14.5 retina | AAAAAAAAAA (2) AACCGTGAAT CACTCATTCA GAAGGTGCTT GGGGCTGGGG (2)
| 120.2 | 0.1202 |
| E16.5 retina | AAAAAAAAAA (2) AACCGTGAAT GAAGGTGTTT (3) GGGGCTGGGG (2) TCAGACATTC
| 67 | 0.067 |
| E18.5 retina | AAAAAAAAAA (2) AACCGTGAAT GAAGGTGCTT GGGGCTGGGG (2) TCAGACATTC
| 392.8 | 0.3928 |
| P0.5 retina | AAAAAAAAAA (2) AACCGTGAAT CACTCATTCA GAAGGTGTTT (3) GGAAAGGGTG (2)
| 155.2 | 0.1552 |
| P2.5 retina | AAAAAAAAAA (2) AACCGTGAAT GGAAAGGGTG (2)
| 336.2 | 0.3362 |
| P4.5 retina | AAAAAAAAAA (2) AACCGTGAAT
| 287.3 | 0.2873 |
| P6.5 retina | AAAAAAAAAA (2) AACCGTGAAT AATGTTAATT GAAGGTGCTT GGAAAGGGTG (2) GGGGCTGGGG (2) TCAGACATTC
| 290.2 | 0.2902 |
| P10.5 crx- retina | AAAAAAAAAA (2) AACCGTGAAT GGAAAGGGTG (2) GGGGCTGGGG (2)
| 65.1 | 0.0651 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AACCGTGAAT CACTCATTCA GAAGGTGTTT (3) GGGGCTGGGG (2)
| 126.8 | 0.1268 |
| Adult retinal | AAAAAAAAAA (2) AACCGTGAAT GGAAAGGGTG (2) GGGGCTGGGG (2)
| 72.3 | 0.0723 |
| ONL | AAAAAAAAAA (2) AACCGTGAAT GTGGCACGCA
| 111 | 0.111 |