Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248353	Hcfc1	host cell factor C1	X	X 29.54 cM	15161
Gene Ontology	nucleus
Human Homolog	HCFC1[host cell factor C1 (VP16-accessory protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 47 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTTTCCACA GATTGTCTTG (2) TTTAGTCAAA 21.2 0.0212 Cb medulloblastoma CACTCACATT 2.3 0.0023 P8 GC+1d culture CACTCACATT GATTGTCTTG (2) TCGTCTCCAG TTTAGTCAAA 20.4 0.0204 P8 GC+SHH+1d culture ACTTTCCACA CACTCACATT GATTGTCTTG (2) TCGTCTCCAG TTTAGTCAAA 20 0.02 3T3 fibroblasts TCGTCTCCAG 3.5 0.0035 E15 cortex GATTGTCTTG (2) 4.9 0.0049 Hypothalamus ACCTTCCTGT GATTGTCTTG (2) TTTAGTCAAA 18.1 0.0181 E12.5 retina ACCTTCCTGT CACTCACATT GATTGTCTTG (2) TCGTCTCCAG TTTAGTCAAA 32 0.032 E14.5 retina GATTGTCTTG (2) TTTAGTCAAA 23.6 0.0236 E16.5 retina ACTTTCCACA GATTGTCTTG (2) 14.5 0.0145 E18.5 retina CACTCACATT GATTGTCTTG (2) TCGTCTCCAG TTTAGTCAAA 50.9 0.0509 P0.5 retina ACTTTCCACA GATTGTCTTG (2) GCCTTTCCAA 9.9 0.0099 P2.5 retina GATTGTCTTG (2) TTTAGTCAAA 12.4 0.0124 P4.5 retina GATTGTCTTG (2) GCCTTTCCAA TTTAGTCAAA 15.9 0.0159 P6.5 retina GATTGTCTTG (2) GCCTTTCCAA 11.7 0.0117 P10.5 crx- retina ACCTTCCTGT CACTCACATT GATTGTCTTG (2) 11.2 0.0112 P10.5 crx+ retina GATTGTCTTG (2) 11.5 0.0115 Adult retinal GATTGTCTTG (2) 3.7 0.0037 ONL GATTGTCTTG (2) 7.7 0.0077