Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2509	Col6a1	procollagen, type VI, alpha 1	10	10 41.1 cM	12833
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport | protein binding | proteolysis and peptidolysis | subtilase activity
Human Homolog	COL6A1[collagen, type VI, alpha 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTAAAAATA (2) GCTCCCCCAC (2) GTCTTTTCTG (2) 13 0.013 Cb medulloblastoma AGTTCAGCTG (2) ATCTTGGTCT GCTCCCCCAC (2) GTCTTTTCTG (2) 27.7 0.0277 P8 GC+1d culture AGGCTGGCCC (3) AGTTCAGCTG (2) ATTAAAAATA (2) CAGACAACCC GCCCTACAGA GCTCCCCCAC (2) 12.4 0.0124 P8 GC+SHH+1d culture ATTAAAAATA (2) GCCCTACAGA GCTCCCCCAC (2) 10.5 0.0105 3T3 fibroblasts AGGCTGGCCC (3) GCTCCCCCAC (2) 45.6 0.0456 P1 cortex ATTAAAAATA (2) 9.1 0.0091 Hypothalamus ATCTTGGTCT ATTAAAAATA (2) CAGACAACCC GCCCTACAGA GCTCCCCCAC (2) 32.5 0.0325 E12.5 retina AGGCTGGCCC (3) GCTCCCCCAC (2) GTCTTTTCTG (2) 7.6 0.0076 E14.5 retina AGGCTGGCCC (3) GCCCTACAGA GCTCCCCCAC (2) 10.9 0.0109 E16.5 retina GCTCCCCCAC (2) 7.2 0.0072 E18.5 retina GCTCCCCCAC (2) 12.7 0.0127 P0.5 retina GCTCCCCCAC (2) 3.9 0.0039 P2.5 retina AGGCTGGCCC (3) ATTAAAAATA (2) GCCCTACAGA GCTCCCCCAC (2) 15.9 0.0159 P4.5 retina ATTAAAAATA (2) GCCCTACAGA GCTCCCCCAC (2) 15.9 0.0159 P6.5 retina ATTAAAAATA (2) GCTCCCCCAC (2) 13.3 0.0133 P10.5 crx+ retina GCTCCCCCAC (2) 17.3 0.0173 Adult retinal AGGCTGGCCC (3) ATTAAAAATA (2) CAGACAACCC GCTCCCCCAC (2) 13.1 0.0131 ONL AGTTCAGCTG (2) 1.9 0.0019