| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CCAAAAAAAA (3) CCAAGTTTAA CCACATATGG CCATTTGATT TTAATAGTGG
| 40.7 | 0.0407 |
| Cb medulloblastoma | CCAAAAAAAA (3) TTAATAGTGG
| 92.5 | 0.0925 |
| P8 GC+1d culture | ATAGTCTACC CCAAAAAAAA (3) CCACATATGG CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 52.3 | 0.0523 |
| P8 GC+SHH+1d culture | CCAAAAAAAA (3) CCACATATGG CCATTTGATT TTAATAGTGG
| 50.4 | 0.0504 |
| 3T3 fibroblasts | CCACATATGG
| 7 | 0.007 |
| E15 cortex | CCAAAAAAAA (3) CCATTTGATT GTCCCTTCCC
| 19.7 | 0.0197 |
| P1 cortex | CCAAAAAAAA (3) CCACATATGG TTAATAGTGG
| 49.9 | 0.0499 |
| Hypothalamus | CCAAAAAAAA (3) GTCCCTTCCC TTAATAGTGG
| 41.6 | 0.0416 |
| E12.5 retina | CCAAAAAAAA (3) CCACATATGG CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 37.7 | 0.0377 |
| E14.5 retina | CCAAAAAAAA (3) CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 29.1 | 0.0291 |
| E16.5 retina | CCAAAAAAAA (3) CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 32.6 | 0.0326 |
| E18.5 retina | CCAAAAAAAA (3) CCATTTGATT TTAATAGTGG
| 43.6 | 0.0436 |
| P0.5 retina | CCAAAAAAAA (3) CCACATATGG CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 47.2 | 0.0472 |
| P2.5 retina | ATAGTCTACC CCAAAAAAAA (3) CCACATATGG CCATTTGATT GTCCCTTCCC TTAAGGAGAC TTAATAGTGG TTCTTTTTCT
| 61.7 | 0.0617 |
| P4.5 retina | CCAAAAAAAA (3) CCATTTGATT GTCCCTTCCC
| 43.6 | 0.0436 |
| P6.5 retina | CCAAAAAAAA (3) CCACATATGG CCATTTGATT GTCCCTTCCC TTAATAGTGG
| 48.3 | 0.0483 |
| P10.5 crx- retina | ATAGTCTACC CCAAAAAAAA (3) CCAAGTTTAA CCATTTGATT TTAATAGTGG
| 26.2 | 0.0262 |
| P10.5 crx+ retina | CCAAAAAAAA (3) CCATTTGATT TTAATAGTGG
| 42.2 | 0.0422 |
| Adult retinal | CCAAAAAAAA (3) CCAAGTTTAA CCACATATGG GTCCCTTCCC TTAATAGTGG
| 53.9 | 0.0539 |
| ONL | ATAGTCTACC CCAAAAAAAA (3) CCATTTGATT GTCCCTTCCC TTAAGGAGAC TTAATAGTGG TTCTTTTTCT
| 24.8 | 0.0248 |