Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.251003	Plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	5	5 80.0 cM	26433
Gene Ontology	endoplasmic reticulum | extracellular space | membrane | oxidoreductase activity | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | procollagen-lysine 5-dioxygenase activity | protein modification
Human Homolog	PLOD3[procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 38 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTGGTTTG GGGTCAGTGG 3.2 0.0032 Cb medulloblastoma AACTGGTTTG CCGGCCTCCC (2) GACTCAGGGA (2) 11.5 0.0115 P8 GC+1d culture CCGGCCTCCC (2) GACTCAGGGA (2) 6.9 0.0069 P8 GC+SHH+1d culture GACTCAGGGA (2) 2.3 0.0023 3T3 fibroblasts CCGGCCTCCC (2) GACTCAGGGA (2) 35 0.035 E15 cortex CCGGCCTCCC (2) 24.7 0.0247 P1 cortex AACTGGTTTG 4.5 0.0045 Hypothalamus GGGTCAGTGG 1.8 0.0018 E12.5 retina GACTCAGGGA (2) GGGTCAGTGG 9.4 0.0094 E14.5 retina ATTAAAATTT (3) GACTCAGGGA (2) 5.4 0.0054 E16.5 retina ATTAAAATTT (3) GACTCAGGGA (2) GGGTCAGTGG 7.2 0.0072 E18.5 retina ATTAAAATTT (3) GACTCAGGGA (2) 3.6 0.0036 P0.5 retina AACTGGTTTG CCGGCCTCCC (2) GACTCAGGGA (2) 7.9 0.0079 P2.5 retina GACTCAGGGA (2) 3.5 0.0035 P4.5 retina AACTGGTTTG CCGGCCTCCC (2) GACTCAGGGA (2) 10 0.01 P6.5 retina AACTGGTTTG CCGGCCTCCC (2) GACTCAGGGA (2) 11.7 0.0117 P10.5 crx- retina AACTGGTTTG GACTCAGGGA (2) 5.6 0.0056 P10.5 crx+ retina CCGGCCTCCC (2) GACTCAGGGA (2) 7.6 0.0076 Adult retinal CCGGCCTCCC (2) 3.7 0.0037 ONL GACTCAGGGA (2) 7.7 0.0077