Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.254067	Rmcs1	response to metastatic cancers 1	17		114887
Mm.254067	H2-Ab1	histocompatibility 2, class II antigen A, beta 1	17	17 18.64 cM	14961
Gene Ontology	antigen presentation | antigen presentation, exogenous antigen | antigen presentation, exogenous antigen via MHC class II | antigen presentation, exogenous peptide antigen | antigen presentation, peptide antigen | antigen processing, exogenous antigen via MHC class II | defense response | early endosome | external side of plasma membrane | Golgi apparatus | immune response | integral to membrane | intracellular | membrane | MHC class II protein complex | MHC class II receptor activity | multivesicular body | peptide antigen binding | plasma membrane | protein binding
Human Homolog	HLA-DQB1[major histocompatibility complex, class II, DQ beta 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 36 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGGAGATGG (3) 1.6 0.0016 Cb medulloblastoma CTGGAGATGG (3) GCCTCCTTCC (2) 4.6 0.0046 P8 GC+1d culture CTGGAGATGG (3) 2.3 0.0023 P8 GC+SHH+1d culture AGAACCTGTC CTGGAGATGG (3) GTGGGAGCAT (2) 5.9 0.0059 3T3 fibroblasts CTGGAGATGG (3) 3.5 0.0035 Hypothalamus CTGGAGATGG (3) GTGGGAGCAT (2) 7.2 0.0072 E12.5 retina CTGGAGATGG (3) 1.9 0.0019 E14.5 retina AGAACCTGTC CTGGAGATGG (3) CTGGGAGATG (3) GTGGGAGCAT (2) TTGGAGCATC 12.7 0.0127 E16.5 retina CTGGAGATGG (3) GTGGGAGCAT (2) 3.6 0.0036 E18.5 retina AGAACCTGTC GTGGGAGCAT (2) 3.6 0.0036 P0.5 retina CTGGAGATGG (3) GCCTCCTTCC (2) 4 0.004 P2.5 retina CTGGAGATGG (3) 3.5 0.0035 P4.5 retina CTGGAGATGG (3) CTGGGAGATG (3) GCCTCCTTCC (2) GTGGGAGCAT (2) 19.8 0.0198 P6.5 retina CTGGAGATGG (3) 3.3 0.0033 P10.5 crx- retina CTGGAGATGG (3) 16.7 0.0167 P10.5 crx+ retina CTGGAGATGG (3) 5.8 0.0058 Adult retinal CTGGAGATGG (3) TTGGAGCATC 9.3 0.0093 ONL AGAACCTGTC CTGGAGATGG (3) GCACACAACA TTGGAGCATC 30.6 0.0306