Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.256765	Ube2d3	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	3		66105
Mm.256765	Nfkb1	nuclear factor of kappa light chain gene enhancer in B-cells 1, p105	3	3 68.9 cM	18033
Gene Ontology	apoptosis | DNA binding | lymph gland development | negative regulation of interleukin-12 biosynthesis | negative regulation of transcription, DNA-dependent | nucleus | nucleus | protein binding | regulation of transcription, DNA-dependent | signal transduction | specific transcriptional repressor activity | transcription factor activity
Human Homolog	NFKB1[nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 40 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTACAATCAG (2) CTACGATCAG TTTTTAAATG (3) 6.5 0.0065 Cb medulloblastoma CTACAATCAG (2) TTTTTAAATG (3) 4.6 0.0046 P8 GC+1d culture CTACAATCAG (2) GCGCTCGCTC (3) GGCTTACCCC TTTTTAAATG (3) 12.5 0.0125 P8 GC+SHH+1d culture CTACAATCAG (2) GGCTTACCCC TTTTTAAATG (3) 7 0.007 E15 cortex TCTGCTGCTG (3) 4.9 0.0049 P1 cortex TTTTTAAATG (3) 13.6 0.0136 E12.5 retina TTTTTAAATG (3) 5.6 0.0056 E14.5 retina TCTGCTGCTG (3) TTGACCAAAA TTTTTAAATG (3) 16.3 0.0163 E16.5 retina TTGACCAAAA TTTTTAAATG (3) 3.6 0.0036 E18.5 retina CTACAATCAG (2) TTTTTAAATG (3) 10.9 0.0109 P0.5 retina CTACAATCAG (2) GCGCTCGCTC (3) TTTTTAAATG (3) 9.9 0.0099 P2.5 retina CTACAATCAG (2) TTTTTAAATG (3) 3.6 0.0036 P4.5 retina TTTTTAAATG (3) 11.9 0.0119 P6.5 retina CTACAATCAG (2) CTACGATCAG TTTTTAAATG (3) 6.7 0.0067 P10.5 crx- retina CTACAATCAG (2) TTTTTAAATG (3) 3.8 0.0038 P10.5 crx+ retina TTGACCAAAA TTTTTAAATG (3) 3.8 0.0038 Adult retinal CTACAATCAG (2) CTACGATCAG GGCTTACCCC 7.5 0.0075 ONL TTGACCAAAA TTTTTAAATG (3) 3.8 0.0038