| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAGAGTGGAA (7) TATTATGTAT (6) TTTCAAAAAA (2)
| 6.5 | 0.0065 |
| Cb medulloblastoma | AAAAGTTGTA (2) GCTTTCTCTC (8) TTTCAAAAAA (2)
| 6.9 | 0.0069 |
| P8 GC+1d culture | AAAAGTTGTA (2) CAGAGTGGAA (7) TATTATGTAT (6) TTTCAAAAAA (2)
| 6.8 | 0.0068 |
| P8 GC+SHH+1d culture | CAGAGTGGAA (7)
| 1.2 | 0.0012 |
| P1 cortex | AAAAGTTGTA (2) TTTCAAAAAA (2)
| 9 | 0.009 |
| Hypothalamus | AAAAGTTGTA (2) GCTTTCTCTC (8) TATTATGTAT (6) TTTCAAAAAA (2)
| 14.4 | 0.0144 |
| E12.5 retina | AAAAGTTGTA (2) TTTCAAAAAA (2)
| 5.7 | 0.0057 |
| E14.5 retina | AAAAGTTGTA (2)
| 3.6 | 0.0036 |
| E16.5 retina | AAAAGTTGTA (2) TTTCAAAAAA (2)
| 5.4 | 0.0054 |
| E18.5 retina | AAAAGTTGTA (2) TTTCAAAAAA (2)
| 12.7 | 0.0127 |
| P2.5 retina | AAAAGTTGTA (2) CAGAGTGGAA (7)
| 5.3 | 0.0053 |
| P6.5 retina | AAAAGTTGTA (2)
| 6.7 | 0.0067 |
| P10.5 crx- retina | GCTTTCTCTC (8)
| 1.9 | 0.0019 |
| P10.5 crx+ retina | CAGAGTGGAA (7) GCTTTCTCTC (8)
| 5.7 | 0.0057 |
| Adult retinal | AAAAGTTGTA (2) TATTATGTAT (6)
| 3.8 | 0.0038 |
| ONL | AAAAGTTGTA (2) CAGAGTGGAA (7) TTTCAAAAAA (2)
| 11.4 | 0.0114 |