| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAACCCTTC AAATAAAGTG ATGATGTGCA CAAGCCCTAG CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACCAGAA (2) TGGTTGCTGG
| 140.2 | 0.1402 |
| Cb medulloblastoma | CCTTTAATCC (3) GAGAAACCCT GGAACAGAAA (2) GGAACCAGAA (2) TGGTTGCTGG TGTGCTAATA
| 168.7 | 0.1687 |
| P8 GC+1d culture | AAAACCCTTC AAATAAAGTG ATGATGTGCA CCTTTAATCC (3) GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG
| 114.1 | 0.1141 |
| P8 GC+SHH+1d culture | ATGATGTGCA CAAGCCCTAG CCTTTAATCC (3) GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG TGTGCTAATA
| 133.6 | 0.1336 |
| 3T3 fibroblasts | CCTTTAATCC (3) GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG
| 325.9 | 0.3259 |
| E15 cortex | AAAACCCTTC ATGATGTGCA CCTTTAATCC (3) GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG
| 351.1 | 0.3511 |
| P1 cortex | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) TGGTTGCTGG
| 259 | 0.259 |
| Hypothalamus | CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) TGGTTGCTGG TGTGCTAATA
| 378.5 | 0.3785 |
| E12.5 retina | ATGATGTGCA CAAGAACAGA (3) CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG
| 259.2 | 0.2592 |
| E14.5 retina | CAAGCCCTAG CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG
| 1080.4 | 1.0804 |
| E16.5 retina | ATGATGTGCA CAAGAACAGA (3) CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG TGTGCTAATA
| 854.7 | 0.8547 |
| E18.5 retina | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) TGGTTGCTGG
| 285.5 | 0.2855 |
| P0.5 retina | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG TGTGCTAATA
| 280.8 | 0.2808 |
| P2.5 retina | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG TGTGCTAATA
| 258.8 | 0.2588 |
| P4.5 retina | AAATAAAGTG CAAGAACAGA (3) CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) TGGTTGCTGG
| 212 | 0.212 |
| P6.5 retina | CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG TGTGCTAATA
| 241.7 | 0.2417 |
| P10.5 crx- retina | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACCAGAA (2) TGGTTGCTGG
| 364.2 | 0.3642 |
| P10.5 crx+ retina | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG
| 157.5 | 0.1575 |
| Adult retinal | ATGATGTGCA CCTTTAATCC (3) GCCCCAGGAG (3) GCCTCCTGGG (4) GGAACAGAAA (2) TGGTTGCTGG
| 364.9 | 0.3649 |
| ONL | ATGATGTGCA CCTTTAATCC (3) GAGAAACCCT GCCCCAGGAG (3) GCCTCCTGGG (4) TGGTTGCTGG
| 494.1 | 0.4941 |