Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.265610	E130317F20Rik	RIKEN cDNA E130317F20 gene			414101
Mm.265610	Ptbp1	polypyrimidine tract binding protein 1	10	10 43.0 cM	19205
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | RNA binding
Human Homolog	PTBP1[polypyrimidine tract binding protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 108 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACAGCTCTG (2) AGAACAAAAC (2) GATGGCATCG GGAAAATATG GTGCTGGGAT (2) 26.1 0.0261 Cb medulloblastoma CCAAGGCTGT CCCAGGCTTG CTCAGTATTG (4) GATGGCATCG GCCAAGCTGG (2) GCCGTACACC (2) 16.1 0.0161 P8 GC+1d culture AACAGCTCTG (2) ACCTGGGCGA (2) AGCCACCATT (2) CCCAGGCTTG CTCAGTATTG (4) GATGGCATCG GCAGGCAAAC TCCCTGGCCA (2) 36.3 0.0363 P8 GC+SHH+1d culture AACAGCTCTG (2) CCCAGGCTTG GATGGCATCG GGAAAATATG GTGCTGGGAT (2) TCCCTGGCCA (2) 26.8 0.0268 3T3 fibroblasts ACCTGGGCGA (2) GATGGCATCG TCCCTGGCCA (2) 52.5 0.0525 E15 cortex AGAACAAAAC (2) AGCCACCATT (2) CCCAGGCTTG GATGGCATCG GCAGGCAAAC GCCAAGCTGG (2) TCCCTGGCCA (2) 39.3 0.0393 P1 cortex AACAGCTCTG (2) CCAAGCTGTC (3) GATGGCATCG TAAGAAAGCT 22.6 0.0226 Hypothalamus CTCAGTATTG (4) GATGGCATCG GCCAGCTGGG GGAAAATATG 12.6 0.0126 E12.5 retina AACAGCTCTG (2) ACCTGGGCGA (2) CCCAGGCTTG GATGGCATCG GGAAAATATG GTGCTGGGAT (2) GTTGTGCAGT TCCCTGGCCA (2) 20.9 0.0209 E14.5 retina AACAGCTCTG (2) GATGGCATCG GCCGTACACC (2) GGAAAATATG 12.7 0.0127 E16.5 retina ATTACGCCAA CCCAGGCTTG GATGGCATCG GGAAAATATG GTTGTGCAGT 12.6 0.0126 E18.5 retina CCAAGCTGTC (3) CCCAGGCTTG GCCAGCTGGG GGAAAATATG GTGCTGGGAT (2) TCCCTGGCCA (2) 19.9 0.0199 P0.5 retina AACAGCTCTG (2) ACCTGGGCGA (2) ATTACGCCAA CCCAGGCTTG GATGGCATCG GCCGTACACC (2) GTGCTGGGAT (2) TCCCTGGCCA (2) 41.4 0.0414 P2.5 retina AACAGCTCTG (2) AGCCACCATT (2) CCAAGGCTGT CCCAGGCTTG GATGGCATCG GGAAAATATG GTGCTGGGAT (2) GTTGTGCAGT TCCCTGGCCA (2) 35.4 0.0354 P4.5 retina CCCAGGCTTG GGAAAATATG 15.8 0.0158 P6.5 retina CCCAGGCTTG CTCAGTATTG (4) GGAAAATATG 16.7 0.0167 P10.5 crx- retina CCAAGGCTGT CCCAGGCTTG GATGGCATCG GCCAAGCTGG (2) GGAAAATATG TAAGAAAGCT TCCCTGGCCA (2) 20.6 0.0206 P10.5 crx+ retina AACAGCTCTG (2) CCCAGGCTTG GCAGGCAAAC GCCAGCTGGG GGAAAATATG 23 0.023 Adult retinal AACAGCTCTG (2) ATTACGCCAA CCCAGGCTTG GATGGCATCG 18.5 0.0185 ONL CCCAGGCTTG GCCAGCTGGG TAAGAAAGCT TCCCTGGCCA (2) 7.6 0.0076