Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.265917	Thra	thyroid hormone receptor alpha	11	11 57.0 cM	21833
Gene Ontology	cartilage condensation | cell growth and/or maintenance | DNA binding | ligand-dependent nuclear receptor activity | negative regulation of transcription | nucleus | organogenesis | ossification | physiological process | receptor activity | regulation of cell cycle | regulation of heart rate | regulation of transcription, DNA-dependent | steroid hormone receptor activity | thyroid hormone receptor activity | transcription factor activity | transcriptional repressor activity
Human Homolog	THRA[thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 101 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACCAAGTAA (2) CCCACTGCCT GACTTGGGTC (2) GTGGCCCACA TCAGGTGAGC TCTGTAGCCC (2) 42.3 0.0423 Cb medulloblastoma AACCAAGTAA (2) CCCACTGCCT GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 90.1 0.0901 P8 GC+1d culture AGTCTGTTTC CATTCCGAGA (2) CCATCTTGAC GAGATAATGT GTGGCCCACA TCTGTAGCCC (2) 51.2 0.0512 P8 GC+SHH+1d culture AGTCTGTTTC CCCACTGCCT GACTTGGGTC (2) GTGGCCCACA TCTGTAGCCC (2) 45.7 0.0457 3T3 fibroblasts GACTTGGGTC (2) GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 38.5 0.0385 E15 cortex GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 84.1 0.0841 P1 cortex AGTCTGTTTC CCATCTTGAC GTGTGAAAGG (4) TCTGTAGCCC (2) 118 0.118 Hypothalamus AGTCTGTTTC CATTCCGAGA (2) CCCACTGCCT GTGGCCCACA TCTGTAGCCC (2) 79.7 0.0797 E12.5 retina CCCACTGCCT GAGATAATGT GTGGCCCACA TCTGTAGCCC (2) 24.4 0.0244 E14.5 retina CCCACTGCCT GTGGCCCACA TCAGGTGAGC TCTGTAGCCC (2) 43.7 0.0437 E16.5 retina AACCAAGTAA (2) AGTCTGTTTC CCATCTTGAC CCCACTGCCT GTGGCCCACA TCAGGTGAGC TCTGTAGCCC (2) 101.3 0.1013 E18.5 retina AGTCTGTTTC CCCACTGCCT GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 63.7 0.0637 P0.5 retina AGTCTGTTTC CCATCTTGAC CCCACTGCCT GTGGCCCACA TCTGTAGCCC (2) 62.9 0.0629 P2.5 retina CATTCCGAGA (2) CCCACTGCCT GGAACTTTGG GTGGCCCACA TCTGTAGCCC (2) 67 0.067 P4.5 retina AGTCTGTTTC CCCACTGCCT GTGGCCCACA TCTGTAGCCC (2) 73.3 0.0733 P6.5 retina AACCAAGTAA (2) AGTCTGTTTC CATTCCGAGA (2) CCCACTGCCT GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 113.2 0.1132 P10.5 crx- retina AACCAAGTAA (2) CATTCCGAGA (2) CCCACTGCCT GTGGCCCACA TCTGTAGCCC (2) 122.5 0.1225 P10.5 crx+ retina CCCACTGCCT GTGGCCCACA GTGTGAAAGG (4) TCTGTAGCCC (2) 96.2 0.0962 Adult retinal CATTCCGAGA (2) CCATCTTGAC CCCACTGCCT GACTTGGGTC (2) GTGGCCCACA TCTGTAGCCC (2) 44.7 0.0447 ONL AGTCTGTTTC CCCACTGCCT GACTTGGGTC (2) GAGATAATGT GGAACTTTGG GTGGCCCACA TCTGTAGCCC (2) 30.5 0.0305