Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.268000	Vim	vimentin	2	2 7.0 cM	22352
Gene Ontology	intermediate filament | intermediate filament-based process | structural molecule activity | type III intermediate filament
Human Homolog	VIM[vimentin]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 120 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGAAGAGA (2) ACAGCCGTGG (2) AGAATTTGGT (2) AGGCCACAGC GGCAGCCCCC (2) TGTACCAGGT TTTTGGATCT 39.1 0.0391 Cb medulloblastoma AAGGAAGAGA (2) AGAATTTGGT (2) AGGCCACAGC GCTCTCCGGC GGCAGCCCCC (2) TAGCTTGTTT TCCAGATCGA 36.8 0.0368 P8 GC+1d culture AACCTTAAAA AAGGAAGAGA (2) AAGGGAAGAG ACAGCCGTGG (2) ACTTGATAAA AGAATTTGGT (2) AGGCCACAGC ATGAGATGCT GGCAGCCCCC (2) TAGCTTGTTT TCCAGATCGA TTTTGGATCT 83.1 0.0831 P8 GC+SHH+1d culture AAGGAAGAGA (2) ACAGCCGTGG (2) AGGCCACAGC GGCAGCCCCC (2) TCCAGATCGA TTTTGGATCT 69.1 0.0691 3T3 fibroblasts AAGGAAGAGA (2) AAGGGAAGAG GGCAGCCCCC (2) TCCAGATCGA 140.1 0.1401 E15 cortex AAGGAAGAGA (2) AGGCCACAGC GCTCTCCGGC GGCAGCCCCC (2) TCCAGATCGA 88.9 0.0889 P1 cortex AGAATTTGGT (2) GGCAGCCCCC (2) 27.3 0.0273 Hypothalamus AAGGAAGAGA (2) ACTTGATAAA AGGCCACAGC GGCCAGGGCT (3) TAGCTTGTTT TTTTGGATCT 34.4 0.0344 E12.5 retina AAGGAAGAGA (2) ACAGCCGTGG (2) AGAATTTGGT (2) AGGCCACAGC GGCAGCCCCC (2) TTTTGGATCT 50.7 0.0507 E14.5 retina AAGGAAGAGA (2) AAGGGAAGAG ACTTGATAAA AGAATTTGGT (2) AGGCCACAGC AGGCCCTGGA ATGAGATGCT GAAAAGGAGA GGCAGCCCCC (2) TAGCTTGTTT TCCAGATCGA 58.2 0.0582 E16.5 retina AACCTTAAAA AAGGAAGAGA (2) AGAATTTGGT (2) AGGCCACAGC GCTCTCCGGC GGCAGCCCCC (2) TAGCTTGTTT TTTTGGATCT 61.5 0.0615 E18.5 retina ACAGCCGTGG (2) ACTTGATAAA AGGCCACAGC GGCAGCCCCC (2) TCCAGATCGA 41.8 0.0418 P0.5 retina AAGGAAGAGA (2) AAGGGAAGAG ACAGCCGTGG (2) ACTTGATAAA GGCAGCCCCC (2) TGTACCAGGT 43.3 0.0433 P2.5 retina AAGGAAGAGA (2) ACAGCCGTGG (2) AGGCCACAGC AGGCCCTGGA GCTCTCCGGC GGCAGCCCCC (2) 44 0.044 P4.5 retina AAGGAAGAGA (2) AAGGGAAGAG ACTTGATAAA AGAATTTGGT (2) AGGCCACAGC GCTCTCCGGC GGCAGCCCCC (2) 33.8 0.0338 P6.5 retina AAGGAAGAGA (2) AGGCCACAGC AGGCCCTGGA GGCAGCCCCC (2) GGCCAGGGCT (3) TGTACCAGGT 25.2 0.0252 P10.5 crx- retina AAGGAAGAGA (2) ACTTGATAAA AGAATTTGGT (2) AGGCCACAGC GGCAGCCCCC (2) TAGCTTGTTT 67 0.067 P10.5 crx+ retina AGGCCACAGC GGCAGCCCCC (2) 17.3 0.0173 Adult retinal AAGGAAGAGA (2) AGAATTTGGT (2) GGCAGCCCCC (2) GGCCAGGGCT (3) 16.7 0.0167 ONL ACAGCCGTGG (2) ACTTGATAAA GGCAGCCCCC (2) TAGCTTGTTT 21 0.021