Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.269474	Ctcf	CCCTC-binding factor	8		13018
Gene Ontology	DNA binding | DNA methylation | dosage compensation, by inactivation of X chromosome | imprinting | negative regulation of cell cycle | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | regulation of transcription, DNA-dependent | zinc ion binding
Human Homolog	CTCF[CCCTC-binding factor (zinc finger protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATGCACA (2) AGACCTGTAA CAGATAACTG CTACGATCAG GAAGGAAACC (3) GAGCCAGCGT TTGGCATCCT 29.5 0.0295 Cb medulloblastoma AAGATGCACA (2) AGACCTGTAA GAAGGAAACC (3) GAGCCAGCGT TTGGCATCCT 23 0.023 P8 GC+1d culture AAGATGCACA (2) AGACCTGTAA TTGGCATCCT 10.2 0.0102 P8 GC+SHH+1d culture AAGATGCACA (2) AGACCTGTAA ATGGACCGGT GAAGGAAACC (3) GAGCCAGCGT TGAAAAATCC TTCCCAGGGC TTGGCATCCT 17.8 0.0178 E15 cortex ATGGACCGGT CAGATAACTG GAGGGTACAG 19.7 0.0197 P1 cortex GAGGGTACAG 4.5 0.0045 Hypothalamus GAAGGAAACC (3) 1.8 0.0018 E12.5 retina AGACCTGTAA TTGGCATCCT 11.3 0.0113 E14.5 retina AGACCTGTAA GAAGGAAACC (3) GAGCCAGCGT TTCCCAGGGC TTGGCATCCT 12.6 0.0126 E16.5 retina AGACCTGTAA GAAGGAAACC (3) GAGCCAGCGT TTCCCAGGGC 23.5 0.0235 E18.5 retina AGACCTGTAA GAGCCAGCGT TTGGCATCCT 18.1 0.0181 P0.5 retina AGACCTGTAA TTGGCATCCT 9.9 0.0099 P2.5 retina AGACCTGTAA GAAGGAAACC (3) GAGCCAGCGT 15.9 0.0159 P4.5 retina AGACCTGTAA GAAGGAAACC (3) TTGGCATCCT 19.8 0.0198 P6.5 retina AGACCTGTAA CTACGATCAG GAAGGAAACC (3) GAGCCAGCGT TGAAAAATCC TTGGCATCCT 11.8 0.0118 P10.5 crx- retina AGACCTGTAA GAAGGAAACC (3) 9.3 0.0093 P10.5 crx+ retina AGACCTGTAA ATGGACCGGT CAGATAACTG GAAGGAAACC (3) GAGCCAGCGT TTGGCATCCT 13.3 0.0133 Adult retinal AAGATGCACA (2) AGACCTGTAA CTACGATCAG GAAGGAAACC (3) GAGCCAGCGT TGAAAAATCC 15.1 0.0151 ONL AGACCTGTAA ATGGACCGGT GAAGGAAACC (3) TGAAAAATCC 7.6 0.0076