Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271798	Htf9c	HpaII tiny fragments locus 9c	16	16 10.9 cM	15547
Gene Ontology	ATP binding | protein amino acid phosphorylation | protein kinase activity | RNA binding | S-adenosylmethionine-dependent methyltransferase activity
Human Homolog	HTF9C[HpaII tiny fragments locus 9C]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATACTTCCAC (2) CAAAGAAGCA (2) CTGCAAGGGT (2) GCTAGGAAAG (2) GGCAACTTTG (6) GTTAGAGACA TGTGTGACAG (2) 14.5 0.0145 Cb medulloblastoma GCTGCCCTGG (2) GCTGCCTGGG GTTAGAGACA TGTGTGACAG (2) 13.8 0.0138 P8 GC+1d culture ATACTTCCAC (2) CTGCAAGGGT (2) GCTGCCCTGG (2) GCTGCCTGGG GGCAACTTTG (6) 10.2 0.0102 P8 GC+SHH+1d culture AAAATTTCTT (2) ATACTTCCAC (2) GCTAGGAAAG (2) GCTGCCCTGG (2) 8.3 0.0083 3T3 fibroblasts ATACTTCCAC (2) CAAAGAAGCA (2) CTGCAAGGGT (2) GCTGCCCTGG (2) GTTAGAGACA 21 0.021 E15 cortex ATACTTCCAC (2) GCTGCCCTGG (2) GCTGCCTGGG 24.6 0.0246 P1 cortex CTGCAAGGGT (2) 4.5 0.0045 Hypothalamus AAAATTTCTT (2) CTGCAAGGGT (2) GCTGCCCTGG (2) 12.6 0.0126 E12.5 retina CCTGGCAAAG CTGCAAGGGT (2) 3.8 0.0038 E14.5 retina ATACTTCCAC (2) CTGCAAGGGT (2) GCTGCCCTGG (2) 9.1 0.0091 E16.5 retina AACAAGGGCC CAAAGAAGCA (2) GCTAGGAAAG (2) GCTGCCCTGG (2) TGTGTGACAG (2) 9 0.009 E18.5 retina AAAATTTCTT (2) CTGCAAGGGT (2) GGCAACTTTG (6) TGTGTGACAG (2) 9 0.009 P0.5 retina AACAAGGGCC ATACTTCCAC (2) CTGCAAGGGT (2) GGCAACTTTG (6) 13.8 0.0138 P2.5 retina ATACTTCCAC (2) CTGCAAGGGT (2) GCTGCCCTGG (2) TGTGTGACAG (2) 10.6 0.0106 P4.5 retina AAAATTTCTT (2) ATACTTCCAC (2) CAAAGAAGCA (2) CCTGGCAAAG CTGCAAGGGT (2) 10 0.01 P6.5 retina AAAATTTCTT (2) ATACTTCCAC (2) CAAAGAAGCA (2) CTGCAAGGGT (2) 13.3 0.0133 P10.5 crx- retina CCTGGCAAAG CTGCAAGGGT (2) 3.8 0.0038 P10.5 crx+ retina CTGCAAGGGT (2) TGTGTGACAG (2) 3.8 0.0038 Adult retinal ATACTTCCAC (2) CTGCAAGGGT (2) GCTGCCCTGG (2) GGCAACTTTG (6) 13 0.013 ONL AAAATTTCTT (2) CAAACCTGTT CTGCAAGGGT (2) 5.7 0.0057