| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CAAGCCCTAG CCCCAGCCAG (3) TACGGAAATG TTTTTGAAAA
| 124 | 0.124 |
| Cb medulloblastoma | CCCCAGCCAG (3) TTATTACTCA
| 80.9 | 0.0809 |
| P8 GC+1d culture | CCCCAGCCAG (3) TACGGAAATG TTATTACTCA TTTTTGAAAA
| 159.8 | 0.1598 |
| P8 GC+SHH+1d culture | CAAGCCCTAG CCCCAGCCAG (3) TACGGAAATG TTATTACTCA TTTTTGAAAA
| 154.6 | 0.1546 |
| 3T3 fibroblasts | CCCCAGCCAG (3)
| 308.4 | 0.3084 |
| E15 cortex | CCCCAGCCAG (3) TACGGAAATG
| 197.9 | 0.1979 |
| P1 cortex | CCCCAGCCAG (3) TACGGAAATG
| 77.2 | 0.0772 |
| Hypothalamus | CCCCAGCCAG (3) TACGGAAATG
| 76.1 | 0.0761 |
| E12.5 retina | CATTTGTGAA CCCCAGCCAG (3) TACGGAAATG TTATTACTCA TTTTTGAAAA
| 272.2 | 0.2722 |
| E14.5 retina | CAAGCCCTAG CCCCAGCCAG (3) TACGGAAATG TTATTACTCA TTTTTGAAAA
| 245.9 | 0.2459 |
| E16.5 retina | CATTTGTGAA CCCCAGCCAG (3) TACGGAAATG TTTATCTCAT TTTTTGAAAA
| 278.9 | 0.2789 |
| E18.5 retina | CCCCAGCCAG (3) TACGGAAATG TTTTTGAAAA
| 198.2 | 0.1982 |
| P0.5 retina | CCCCAGCCAG (3) TACGGAAATG TTATTACTCA TTTTTGAAAA
| 182.6 | 0.1826 |
| P2.5 retina | CCCCAGCCAG (3) TACGGAAATG TTTTTGAAAA
| 142.6 | 0.1426 |
| P4.5 retina | CCCCAGCCAG (3) TACGGAAATG
| 154.5 | 0.1545 |
| P6.5 retina | CCCCAGCCAG (3) TACGGAAATG
| 111.7 | 0.1117 |
| P10.5 crx- retina | CCCCAGCCAG (3) TACGGAAATG TTATTACTCA
| 98.5 | 0.0985 |
| P10.5 crx+ retina | CCCCAGCCAG (3) TACGGAAATG
| 86.5 | 0.0865 |
| Adult retinal | CCCCAGCCAG (3) TACGGAAATG
| 76 | 0.076 |
| ONL | CATTTGTGAA CCCCAGCCAG (3) TTTATCTCAT
| 36.3 | 0.0363 |