| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AACAACCAGA (2) AAGAGAAAAC (2) CTCACTCACT GGAACTTTGA (2) GGCTTCTCTG (2)
| 11.4 | 0.0114 |
| Cb medulloblastoma | GCGTTGGTCT GGAACTTTGA (2) TTCTTGGAAC
| 11.5 | 0.0115 |
| P8 GC+1d culture | GCGTTGGTCT GGAACTTTGA (2)
| 11.4 | 0.0114 |
| P8 GC+SHH+1d culture | GCGTTGGTCT GGAACTTTGA (2)
| 7.1 | 0.0071 |
| 3T3 fibroblasts | GCGTTGGTCT
| 17.5 | 0.0175 |
| P1 cortex | GCGTTGGTCT
| 4.5 | 0.0045 |
| Hypothalamus | CTCACTCACT GCGTTGGTCT TTTCCTGGAC
| 19.9 | 0.0199 |
| E12.5 retina | GCGTTGGTCT GGAACTTTGA (2) TTCTTGGAAC
| 11.3 | 0.0113 |
| E16.5 retina | AACAACCAGA (2) GCGTTGGTCT GGAACTTTGA (2)
| 7.2 | 0.0072 |
| E18.5 retina | AACAACCAGA (2) GGAACTTTGA (2) GGCTTCTCTG (2) TTCTTGGAAC TTTCCTGGAC
| 9 | 0.009 |
| P0.5 retina | GGAACTTTGA (2) TTTCCTGGAC
| 4 | 0.004 |
| P2.5 retina | CTCACTCACT GCGTTGGTCT GGAACTTTGA (2)
| 15.9 | 0.0159 |
| P4.5 retina | GCGTTGGTCT
| 5.9 | 0.0059 |
| P6.5 retina | GCGTTGGTCT
| 11.7 | 0.0117 |
| P10.5 crx- retina | GCGTTGGTCT TTCTTGGAAC
| 3.8 | 0.0038 |
| P10.5 crx+ retina | AACAACCAGA (2) GCGTTGGTCT
| 21.1 | 0.0211 |
| Adult retinal | AAGAGAAAAC (2) GCGTTGGTCT GGAACTTTGA (2)
| 13 | 0.013 |
| ONL | AAGAGAAAAC (2) GCGTTGGTCT GGAACTTTGA (2)
| 19.1 | 0.0191 |