| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CTACTAACCC (5) GAGTCCTGAC (3) TGAATAACAA (3) TGAATGAGAA (3) TGGTTGCTGG TTCAAAAGAG (4)
| 79.8 | 0.0798 |
| Cb medulloblastoma | GAGTCCTGAC (3) TGGTTGCTGG TTCAAAAGAG (4)
| 117.9 | 0.1179 |
| P8 GC+1d culture | AGACCCTGCC AGCCGGAGTA (3) CAAACATAGC (3) TGAATGAGAA (3) TGGTTGCTGG TTCAAAAGAG (4)
| 73 | 0.073 |
| P8 GC+SHH+1d culture | AGCCGGAGTA (3) AGCCGGGCGT CAAACATAGC (3) CTACTAACCC (5) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4)
| 104.2 | 0.1042 |
| 3T3 fibroblasts | AGACCCTGCC AGCCGGAGTA (3) AGCCGGGCGT CTACTAACCC (5) TGGTTGCTGG
| 234.8 | 0.2348 |
| E15 cortex | AGCCGGGCGT TGGTTGCTGG
| 287 | 0.287 |
| P1 cortex | TGAAAATGTA (3) TGGTTGCTGG TTCACCTTTA (3) TTTTAACTTT
| 122.7 | 0.1227 |
| Hypothalamus | AGCCGGAGTA (3) CAAACATAGC (3) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4)
| 356.8 | 0.3568 |
| E12.5 retina | AGCCGGAGTA (3) AGCCGGGCGT TGGTTGCTGG
| 163.4 | 0.1634 |
| E14.5 retina | AGCCGGAGTA (3) CAAACATAGC (3) TGGTTGCTGG TTCAAAAGAG (4)
| 941.9 | 0.9419 |
| E16.5 retina | AGACCCTGCC CAAACATAGC (3) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4)
| 780.5 | 0.7805 |
| E18.5 retina | AGCCGGAGTA (3) CAAACATAGC (3) TGAATAAAAA TGAATAACAA (3) TGGTTGCTGG TTCAAAAGAG (4) TTCACCTTTA (3) TTTTAACTTT
| 267.2 | 0.2672 |
| P0.5 retina | CAAACATAGC (3) GAGTCCTGAC (3) TGGTTGCTGG TTCAAAAGAG (4)
| 206.1 | 0.2061 |
| P2.5 retina | AGACCCTGCC AGCCGGGCGT CAAACATAGC (3) GAGTCCTGAC (3) TGAATAAAAA TGAATAACAA (3) TGGTTGCTGG TTCAAAAGAG (4)
| 188.3 | 0.1883 |
| P4.5 retina | AGACCCTGCC CAAACATAGC (3) GAGTCCTGAC (3) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4)
| 166.5 | 0.1665 |
| P6.5 retina | AGCCGGAGTA (3) AGCCGGGCGT CAAACATAGC (3) CTACTAACCC (5) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4) TTCACCTTTA (3)
| 176.8 | 0.1768 |
| P10.5 crx- retina | AGACCCTGCC AGCCGGAGTA (3) AGCCGGGCGT CAAACATAGC (3) GAGTCCTGAC (3) TGGTTGCTGG TTCAAAAGAG (4)
| 304.7 | 0.3047 |
| P10.5 crx+ retina | AGACCCTGCC AGCCGGGCGT CAAACATAGC (3) GAGTCCTGAC (3) TGAATAAAAA TGGTTGCTGG TTCAAAAGAG (4)
| 119 | 0.119 |
| Adult retinal | AGACCCTGCC AGCCGGAGTA (3) AGCCGGGCGT CAAACATAGC (3) GAGTCCTGAC (3) TGGTTGCTGG TTCAAAAGAG (4)
| 233.6 | 0.2336 |
| ONL | AGACCCTGCC CAAACATAGC (3) TGAATAAAAA TGAATGAGAA (3) TGGTTGCTGG TTCAAAAGAG (4)
| 407.9 | 0.4079 |