Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276325	Sod1	superoxide dismutase 1, soluble	16	16 61.0 cM	20655
Gene Ontology	activation of MAPK | antioxidant activity | copper, zinc superoxide dismutase activity | copper, zinc superoxide dismutase activity | copper, zinc superoxide dismutase activity | cytoplasm | DNA fragmentation | metal ion binding | mitochondrion | oxidoreductase activity | removal of superoxide radicals | response to oxidative stress | superoxide metabolism
Human Homolog	SOD1[superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult))]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGAAACAAGA CTTCCCCGGG (2) GGTTCCACGT TAGCGCGCCC (3) TTGGAGACCT 17.9 0.0179 Cb medulloblastoma AAAAAAAAGA AGAAACAAGA AGAAACCAAG (2) CTTCCCCGGG (2) GACCACCATT 50.8 0.0508 P8 GC+1d culture AAAAAAAAGA AGAAACAAGA AGAAACCAAG (2) ATATTTTCTG (3) CTGGCCTTCA TAGCGCGCCC (3) 19.4 0.0194 P8 GC+SHH+1d culture AAAAAAAAGA AGAAACAAGA AGAAACCAAG (2) CTTCCCCGGG (2) GACCACCATT GGGATGGGGG (3) TTGCCGCAGT TTGGAGACCT 36.3 0.0363 3T3 fibroblasts AGAAACAAGA CCTCTCTTCA CTGGCCTTCA CTTCCCCGGG (2) TAGCGCGCCC (3) 80.6 0.0806 E15 cortex AGAAACAAGA CTTCCCCGGG (2) 34.6 0.0346 P1 cortex AGAAACAAGA AGAAACCAAG (2) CTTCCCCGGG (2) 40.8 0.0408 Hypothalamus AGAAACAAGA CCTCTCTTCA CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT TTGCCGCAGT TTGGAGACCT 41.5 0.0415 E12.5 retina AAAAAAAAGA AGAAACAAGA AGAAACCAAG (2) CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT GGTTCCACGT 60.3 0.0603 E14.5 retina AAAAAAAAGA AGAAACAAGA ATATTTTCTG (3) CCTCTCTTCA CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT TTGCCGCAGT 28.9 0.0289 E16.5 retina AGAAACAAGA ATATTTTCTG (3) CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT GCGATGAAAG TTGCCGCAGT TTGGAGACCT 34.4 0.0344 E18.5 retina AGAAACAAGA CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT 27.2 0.0272 P0.5 retina AAAAAAAAGA AGAAACAAGA ATATTTTCTG (3) CTTCCCCGGG (2) 43.2 0.0432 P2.5 retina AAAAAAAAGA AGAAACAAGA CCTCTCTTCA CTTCCCCGGG (2) GGGATGGGGG (3) 44.1 0.0441 P4.5 retina AGAAACAAGA AGAAACCAAG (2) ATATTTTCTG (3) CTGGCCTTCA CTTCCCCGGG (2) GGGATGGGGG (3) 23.8 0.0238 P6.5 retina AAAAAAAAGA AGAAACAAGA ATATTTTCTG (3) CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT 41.7 0.0417 P10.5 crx- retina AAAAAAAAGA AGAAACAAGA ATATTTTCTG (3) CTTCCCCGGG (2) GCGATGAAAG 31.7 0.0317 P10.5 crx+ retina AAAAAAAAGA AGAAACAAGA CTGGCCTTCA CTTCCCCGGG (2) GACCACCATT GGTTCCACGT 40.4 0.0404 Adult retinal AGAAACAAGA CTTCCCCGGG (2) TTGCCGCAGT 14.9 0.0149 ONL AGAAACAAGA ATATTTTCTG (3) 9.5 0.0095