Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277792	Col1a2	procollagen, type I, alpha 2	6	6 0.68 cM	12843
Gene Ontology	cell adhesion | collagen | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | phosphate transport
Human Homolog	COL1A2[collagen, type I, alpha 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 207 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (2) AAAGCCAAGC (2) AACATTAAAA (2) AACATTCAAA (2) AACATTCGCA CGCCTGCTAG CTATAAAGAC GGAAAATGGC GGCAAAAAAG GGTCCTTTCT (2) GTTCCAAAGA TCTCACTCAC TGAACCAAGA 262.6 0.2626 Cb medulloblastoma AAAAAAAAAA (2) AGAATAGGAC (3) GCCTTGGGTT (2) GGAAAATGGC GGTCCTTTCT (2) TGTGTTTGTG (2) TTTTCTATGC (2) 832.4 0.8324 P8 GC+1d culture AAAAAAAAAA (2) AAAGGACACA (2) AACATTCAAA (2) AACATTCGCA CCCTACTTCA CGCCTGCTAG CTATAAAGAC GACAGCCCTG GGAAAATGGC GGTCCTTTCT (2) GGTTTCTTTT (2) GTTCCAAAGA TCTCACTCAC TCTTCTATGC (2) TGTGTTTGTG (2) 254.4 0.2544 P8 GC+SHH+1d culture AAAAAAAAAA (2) AACATTCAAA (2) AACATTCGCA AGAATAGGAC (3) GAAGGATTCA (2) GGAAAATGGC GGCAAAAAAG GGCCTCCTGG (3) GGGACCCAGA GGGCCCTCTG GGTCCTTTCT (2) GGTTTCTTTT (2) GTTCCAAAGA TCTCACTCAC TGTGTTTGTG (2) 338.5 0.3385 3T3 fibroblasts AAAAAAAAAA (2) AACATTCAAA (2) AACATTCGCA CCCTACTTCA CGCCTGCTAG GAAGGATTCA (2) GCCTTGGGTT (2) GGAAAATGGC GGCCTCCTGG (3) GTTCCAAAGA TCTTCTATGC (2) 588.7 0.5887 E15 cortex AAAAAAAAAA (2) GACAGCCCTG GCCTTGGGTT (2) GGAAAATGGC GGCCTCCTGG (3) GGTCCTTTCT (2) 262.1 0.2621 P1 cortex AAAAAAAAAA (2) GACAGCCCTG GGGACCCAGA GGTCCTTTCT (2) GGTTTCTTTT (2) TGTGTTTGTG (2) TTTTCTATGC (2) 281.6 0.2816 Hypothalamus AAAAAAAAAA (2) AAAGCCAAGC (2) AACATTCAAA (2) GACAGCCCTG GCCTTGGGTT (2) GGAAAATGGC GGCCTCCTGG (3) GGGACCCAGA GGTCCTTTCT (2) TCTCACTCAC TTTTCTATGC (2) 152 0.152 E12.5 retina AAAAAAAAAA (2) AAAGTGGAAG AACATTCAAA (2) AACATTCGCA AGAATAGGAC (3) CCCTACTTCA CTATAAAGAC GACAGCCCTG GGAAAATGGC GGCCTCCTGG (3) GGTCCTTTCT (2) TGTGTTTGTG (2) TTGCTCTCAG 180.4 0.1804 E14.5 retina AAAAAAAAAA (2) AACATTAAAA (2) AGAATAGGAC (3) CCCTACTTCA GAAGGATTCA (2) GACCAAGGAG GGAAAATGGC GGGGGCTGGG GGTCCTTTCT (2) GTGGCAGCAG TCTCACTCAC TTGCTCTCAG 132.7 0.1327 E16.5 retina AAAAAAAAAA (2) AAAGCCAAGC (2) AGAATAGGAC (3) CCCTACTTCA GGAAAATGGC GGGACCCAGA GGTCCTTTCT (2) GGTTTCTTTT (2) TGTGTTTGTG (2) 76 0.076 E18.5 retina AAAAAAAAAA (2) CCCTACTTCA GACCAAGGAG GCCTTGGGTT (2) GGAAAATGGC GGGACCCAGA GGGGGCTGGG GGTCCTTTCT (2) 425.6 0.4256 P0.5 retina AAAAAAAAAA (2) CCCTACTTCA GCCTTGGGTT (2) GGAAAATGGC GGCCTCCTGG (3) GGGACCCAGA GGTCCTTTCT (2) TCTCACTCAC TGTGTTTGTG (2) 184.8 0.1848 P2.5 retina AAAAAAAAAA (2) AAAGGACACA (2) AACATTAAAA (2) CCCTACTTCA GACCAAGGAG GGAAAATGGC GGCCTCCTGG (3) GGTCCTTTCT (2) GTTCCAAAGA TGTGTTTGTG (2) TTGCTCTCAG 376.6 0.3766 P4.5 retina AAAAAAAAAA (2) AAAGGACACA (2) CCCTACTTCA GACCAAGGAG GGAAAATGGC GGCCTCCTGG (3) GGGCCCTCTG GGTCCTTTCT (2) 325 0.325 P6.5 retina AAAAAAAAAA (2) AAAGGACACA (2) AACATTAAAA (2) CCCTACTTCA GACAGCCCTG GACCAAGGAG GGAAAATGGC GGTCCTTTCT (2) GTGGCAGCAG TCTCACTCAC TGAACCAAGA TGTGTTTGTG (2) TTTTCTATGC (2) 313.6 0.3136 P10.5 crx- retina AAAAAAAAAA (2) AAAGGACACA (2) GAAGGATTCA (2) GACAGCCCTG GGAAAATGGC GGGCCCTCTG GGTCCTTTCT (2) GTGGCAGCAG TGTGTTTGTG (2) 78.2 0.0782 P10.5 crx+ retina AAAAAAAAAA (2) AACATTCAAA (2) AACATTCGCA AGAATAGGAC (3) CCCTACTTCA GACAGCCCTG GCCTTGGGTT (2) GGAAAATGGC GGGACCCAGA GGGCCCTCTG GGTCCTTTCT (2) GGTTTCTTTT (2) TGTGTTTGTG (2) 145.9 0.1459 Adult retinal AAAAAAAAAA (2) AAAGGACACA (2) AAAGTGGAAG AGAATAGGAC (3) GACAGCCCTG GCCTTGGGTT (2) GGAAAATGGC GGCCTCCTGG (3) GGGCCCTCTG GGTCCTTTCT (2) TGTGTTTGTG (2) 98.3 0.0983 ONL AAAAAAAAAA (2) GGGACCCAGA GGGGGCTGGG GGTCCTTTCT (2) TGAACCAAGA TGTGTTTGTG (2) 128.3 0.1283