| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GTGGAGGAAG TGATATTTGA (2) TGGTTGCTGG
| 76.7 | 0.0767 |
| Cb medulloblastoma | GCTGCTGCCA (2) TGGTTGCTGG
| 117.9 | 0.1179 |
| P8 GC+1d culture | TGGTTGCTGG
| 57.1 | 0.0571 |
| P8 GC+SHH+1d culture | TGGTTGCTGG
| 89 | 0.089 |
| 3T3 fibroblasts | GCTGCTGCCA (2) TGGTTGCTGG
| 255.8 | 0.2558 |
| E15 cortex | TGATATTTGA (2) TGGTTGCTGG
| 282 | 0.282 |
| P1 cortex | TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 109.1 | 0.1091 |
| Hypothalamus | GCTGCTGCCA (2) TGGTTGCTGG
| 351.4 | 0.3514 |
| E12.5 retina | GCTGCTGCCA (2) TACCTATTAA TGGTTGCTGG
| 165.2 | 0.1652 |
| E14.5 retina | GCTGCTGCCA (2) TGGTTGCTGG
| 938.3 | 0.9383 |
| E16.5 retina | GCTGCTGCCA (2) TGATATTTGA (2) TGGTTGCTGG
| 773.3 | 0.7733 |
| E18.5 retina | GCTGCTGCCA (2) TGGTTGCTGG
| 256.4 | 0.2564 |
| P0.5 retina | TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 196.3 | 0.1963 |
| P2.5 retina | GCTGCTGCCA (2) TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 174.2 | 0.1742 |
| P4.5 retina | TGATATTTGA (2) TGGTTGCTGG
| 156.5 | 0.1565 |
| P6.5 retina | TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 160.1 | 0.1601 |
| P10.5 crx- retina | TGATATTTGA (2) TGGTTGCTGG
| 284.2 | 0.2842 |
| P10.5 crx+ retina | GCTGCTGCCA (2) TGATATTTGA (2) TGGTTGCTGG
| 105.7 | 0.1057 |
| Adult retinal | GCTGCTGCCA (2) GTGGAGGAAG TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 240.8 | 0.2408 |
| ONL | TACCTATTAA TGATATTTGA (2) TGGTTGCTGG
| 402.2 | 0.4022 |