| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAACAAAAC (3) ATTGCCTATA (2) ATTTTTTTTT (4) CTTTCCCTGC (3) TGCGCTCTGA (2)
| 55.4 | 0.0554 |
| P8 GC+1d culture | AAGAGAATGA (2) ATTTTTTTTT (4) CCATCCTGGA (3) CGTGGTCCCC (2) CTTTCCCTGC (3) GGCCCCCAAG
| 30.7 | 0.0307 |
| P8 GC+SHH+1d culture | ATTTTTTTTT (4) CTTTCCCTGC (3) TGCGCTCTGA (2)
| 42.2 | 0.0422 |
| 3T3 fibroblasts | ATTGCCTATA (2) CTTTCCCTGC (3) GCTGTGCCTG (5) GGCCCCCAAG
| 59.6 | 0.0596 |
| E15 cortex | ATTGCCTATA (2) CTTTCCCTGC (3) TGCTGTGGAG (3)
| 29.6 | 0.0296 |
| P1 cortex | ATTGCCTATA (2) ATTTTTTTTT (4) GGCCCCCAAG
| 13.5 | 0.0135 |
| Hypothalamus | TGCTGTGGAG (3)
| 3.6 | 0.0036 |
| E12.5 retina | CTTTCCCTGC (3) GCTGTGCCTG (5)
| 13.2 | 0.0132 |
| E14.5 retina | ATTTTTTTTT (4) CCATCCTGGA (3) CTTTCCCTGC (3) GCTGTGCCTG (5) TGGCAGGGCC (2)
| 14.5 | 0.0145 |
| E16.5 retina | AAAACAAAAG (4) CTTTCCCTGC (3) GCTGTGCCTG (5) GGCCCCCAAG TGGCAGGGCC (2)
| 12.6 | 0.0126 |
| E18.5 retina | ATTTTTTTTT (4) CTTTCCCTGC (3)
| 3.6 | 0.0036 |
| P0.5 retina | AAAACAAAAC (3) ATTTTTTTTT (4) CCATCCTGGA (3) CGTGGTCCCC (2) CTTTCCCTGC (3)
| 15.7 | 0.0157 |
| P2.5 retina | ATTTTTTTTT (4) CTTTCCCTGC (3) GGCCCCCAAG TGCTGTGGAG (3)
| 8.9 | 0.0089 |
| P4.5 retina | ATTTTTTTTT (4) CTTTCCCTGC (3) GGCCCCCAAG TGGCAGGGCC (2)
| 10 | 0.01 |
| P6.5 retina | AAAACAAAAC (3) CTTTCCCTGC (3)
| 5 | 0.005 |
| P10.5 crx- retina | AAAACAAAAC (3) AAAACAAAAG (4) CTTTCCCTGC (3) TGCTGTGGAG (3)
| 7.6 | 0.0076 |
| P10.5 crx+ retina | CTTTCCCTGC (3) TGGCAGGGCC (2)
| 3.8 | 0.0038 |
| Adult retinal | CCATCCTGGA (3)
| 1.9 | 0.0019 |
| ONL | AAAACAAAAG (4) CCATCCTGGA (3) TGCTGTGGAG (3)
| 5.7 | 0.0057 |