| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GACAGGCTGG (2) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 8.1 | 0.0081 |
| Cb medulloblastoma | GAGAAGGCCG (3) GCAGTCCTGG TCTCAAAAAA (3) TTGAGCTCTG (2)
| 20.7 | 0.0207 |
| P8 GC+1d culture | GTGTTCCTGG (3) TCTCAAAAAA (3)
| 5.7 | 0.0057 |
| P8 GC+SHH+1d culture | GTGTTCCTGG (3) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 14 | 0.014 |
| 3T3 fibroblasts | GTGTTCCTGG (3) TTGAGCTCTG (2)
| 14 | 0.014 |
| E15 cortex | GAGAAGGCCG (3) GCTTGCCCTT
| 9.8 | 0.0098 |
| P1 cortex | GCAGTCCTGG TTGAGCTCTG (2)
| 9 | 0.009 |
| Hypothalamus | GTGTTCCTGG (3) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 9 | 0.009 |
| E12.5 retina | GTGTTCCTGG (3) TTGAGCTCTG (2)
| 13.2 | 0.0132 |
| E14.5 retina | GACAGGCTGG (2) GTGTTCCTGG (3) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 9 | 0.009 |
| E16.5 retina | GAGAAGGCCG (3) GTGTTCCTGG (3) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 9 | 0.009 |
| E18.5 retina | TCTCAAAAAA (3) TTGAGCTCTG (2)
| 9.1 | 0.0091 |
| P0.5 retina | TTGAGCTCTG (2)
| 7.9 | 0.0079 |
| P2.5 retina | GAGAAGGCCG (3) GCAGTCCTGG TCTCAAAAAA (3) TTGAGCTCTG (2)
| 14.2 | 0.0142 |
| P4.5 retina | TCTCAAAAAA (3) TTGAGCTCTG (2)
| 6 | 0.006 |
| P6.5 retina | GTGTTCCTGG (3) TCTCAAAAAA (3) TTGAGCTCTG (2)
| 10 | 0.01 |
| P10.5 crx- retina | GACAGGCTGG (2) TTGAGCTCTG (2)
| 16.8 | 0.0168 |
| P10.5 crx+ retina | TCTCAAAAAA (3) TTGAGCTCTG (2)
| 5.7 | 0.0057 |
| Adult retinal | GCAGTCCTGG TCTCAAAAAA (3) TTGAGCTCTG (2)
| 11.2 | 0.0112 |
| ONL | GCTTGCCCTT TCTCAAAAAA (3)
| 9.6 | 0.0096 |