| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAAAACAAAA (2) CACCTTGGTG (2) GAAGAGAGCC GGAAGTACAG TTTTAAATCT
| 218.5 | 0.2185 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAAAACAAAA (2) GGAAGTACAG
| 837.1 | 0.8371 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGCGTTTC (3) ATGGGCCTTT CTTTCCCTTG GAAGAGAGCC GGAAGTACAG
| 223.7 | 0.2237 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAAACAAAA (2) ATACAAAATA GGAAGTACAG TAGCAAAGTT TGTGGAATAC
| 301.1 | 0.3011 |
| 3T3 fibroblasts | AAAAAAAAAA (2) CACCTTGGTG (2)
| 38.5 | 0.0385 |
| E15 cortex | AAAAAAAAAA (2) AAAAACAAAA (2)
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGGCCTTT GGAAGTACAG TAGCAAAGTT TTAAGAAATA (2)
| 267.9 | 0.2679 |
| Hypothalamus | AAAAAAAAAA (2) AAAAACAAAA (2) ATACAAAATA GGAAGTACAG TGTGGAATAC TTAAGAAATA (2)
| 137.6 | 0.1376 |
| E12.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGCGTTTC (3) GGAAGTACAG TGTGGAATAC
| 165.2 | 0.1652 |
| E14.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATACAAAATA GGAAGTACAG TAGCAAAGTT TGTGGAAAAA (3) TGTGGAATAC TTAAGAAATA (2)
| 112.8 | 0.1128 |
| E16.5 retina | AAAAAAAAAA (2) GGAAGTACAG TTTTAAATCT
| 52.5 | 0.0525 |
| E18.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGGCCTTT GGAAGTACAG TAGCAAAGTT TGTGGAAAAA (3) TTAAGAAATA (2)
| 398.2 | 0.3982 |
| P0.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGGCCTTT CCCTGCCATT GGAAGTACAG TTAAGAAATA (2)
| 145.4 | 0.1454 |
| P2.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATACAAAATA GGAAGTACAG TGTGGAAAAA (3)
| 341.4 | 0.3414 |
| P4.5 retina | AAAAAAAAAA (2) AAAAACAAAA (2) GGAAGTACAG TGTGGAAAAA (3) TGTGGAATAC TTTTAAATCT
| 301.3 | 0.3013 |
| P6.5 retina | AAAAAAAAAA (2) ATGGGCCTTT GGAAGTACAG TGTGGAATAC
| 273.5 | 0.2735 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAAAACAAAA (2) ATGGGCCTTT CTTTCCCTTG GGAAGTACAG TTTTAAATCT
| 57.7 | 0.0577 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ATACAAAATA GAAGAGAGCC GGAAGTACAG
| 103.7 | 0.1037 |
| Adult retinal | AAAAAAAAAA (2) AAAAACAAAA (2) GGAAGTACAG
| 64.9 | 0.0649 |
| ONL | AAAAAAAAAA (2) AAAAACAAAA (2) ATACAAAATA GAAGAGAGCC GGAAGTACAG
| 114.8 | 0.1148 |