| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAATCCCCAA (2) ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GGAAGGGAAA GTTGGAACCT (3) TTCCCTGGGC
| 66.8 | 0.0668 |
| Cb medulloblastoma | CCTTTAATCC (3) TTCCCTGGGC
| 43.9 | 0.0439 |
| P8 GC+1d culture | AAATCCCCAA (2) CCTTTAATCC (3) GCCTGACCCC (2) GGAAGGGAAA GTTGGAACCT (3) TATCTTCTCT TTTCTCTCTC (2)
| 44.4 | 0.0444 |
| P8 GC+SHH+1d culture | ACTTCATTTG CCTTTAATCC (3) GTTGGAACCT (3) TATCTTCTCT TTTCTCTCTC (2)
| 37.5 | 0.0375 |
| 3T3 fibroblasts | AAATCCCCAA (2) AAGCCAGTGA (5) ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GTTGGAACCT (3)
| 91.1 | 0.0911 |
| E15 cortex | AAATCCCCAA (2) AAGCCAGTGA (5) CCTTTAATCC (3)
| 64.2 | 0.0642 |
| P1 cortex | ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GCTTTTAAAA (3)
| 172.6 | 0.1726 |
| Hypothalamus | CCTTTAATCC (3) GAAACCTTGA GCCTGACCCC (2) TATCTGTCAC
| 28.9 | 0.0289 |
| E12.5 retina | AAATCCCCAA (2) AAGCCAGTGA (5) CCTTTAATCC (3) GCCTGACCCC (2) GTTGGAACCT (3)
| 90.3 | 0.0903 |
| E14.5 retina | CCTTTAATCC (3) GTTGGAACCT (3) TATCTTCTCT
| 123.9 | 0.1239 |
| E16.5 retina | AAATCCCCAA (2) ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GCTTTTAAAA (3) TATCTTCTCT
| 83.2 | 0.0832 |
| E18.5 retina | ACTTCATTTG CCTTTAATCC (3) GAAACCTTGA GCCTGACCCC (2) GCTTTTAAAA (3) GTTGGAACCT (3) TATCTGTCAC
| 34.4 | 0.0344 |
| P0.5 retina | CCTTTAATCC (3) GCCTGACCCC (2) GTTGGAACCT (3) TATCTGTCAC TATCTTCTCT TTCCCTGGGC
| 84.5 | 0.0845 |
| P2.5 retina | CCTTTAATCC (3) GCCTGACCCC (2) GCTTTTAAAA (3) TTCCCTGGGC
| 77.5 | 0.0775 |
| P4.5 retina | ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GTTGGAACCT (3) TATCTTCTCT
| 57.5 | 0.0575 |
| P6.5 retina | CCTTTAATCC (3) GTTGGAACCT (3)
| 71.7 | 0.0717 |
| P10.5 crx- retina | ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) TATCTGTCAC TCCTTGGCTG
| 72.6 | 0.0726 |
| P10.5 crx+ retina | AAGCCAGTGA (5) ACTTCATTTG CCTTTAATCC (3) GCCTGACCCC (2) GCTTTTAAAA (3) GTTGGAACCT (3)
| 61.4 | 0.0614 |
| Adult retinal | CCTTTAATCC (3) GCCTGACCCC (2) GGAAGGGAAA GTTGGAACCT (3)
| 139 | 0.139 |
| ONL | AAGCCAGTGA (5) CCTTTAATCC (3) GTTGGAACCT (3) TCCTTGGCTG
| 95.7 | 0.0957 |