Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28424	Sox12	SRY-box containing gene 12	2		20667
Gene Ontology	chromatin | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SOX12[SRY (sex determining region Y)-box 12]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) GCACTGCATT GGGGGGAGGG (5) TGAGTGAAGA 24.5 0.0245 Cb medulloblastoma GCACTGCATT GCGGACTACC (2) 6.9 0.0069 P8 GC+1d culture ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) GCACTGCATT TGAGTGAAGA 15.9 0.0159 P8 GC+SHH+1d culture CCCAACACTG (2) GCACTGCATT GCGGACTACC (2) TGAGTGAAGA 17.6 0.0176 3T3 fibroblasts AGGAGTGAAG TGAGTGAAGA 14 0.014 E15 cortex ACGTTTTCCG TCTAAACAAA TGAGTGAAGA 29.6 0.0296 P1 cortex ACGTTTTCCG CTTGATGCTT (2) TCTAAACAAA TGAGTGAAGA 27.2 0.0272 Hypothalamus ACGTTTTCCG CCCAACACTG (2) CTTGATGCTT (2) 9 0.009 E12.5 retina AGGAGTGAAG TGAGTGAAGA 11.3 0.0113 E14.5 retina ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) CTTGATGCTT (2) TGAGTGAAGA 12.6 0.0126 E16.5 retina ACGTTTTCCG AGGAGTGAAG TGAGTGAAGA 12.6 0.0126 E18.5 retina AGGAGTGAAG CTTGATGCTT (2) GGGGGGAGGG (5) TGAGTGAAGA 12.7 0.0127 P0.5 retina AGGAGTGAAG CCCAACACTG (2) CTTGATGCTT (2) GCACTGCATT GCGGACTACC (2) TGAGTGAAGA 17.9 0.0179 P2.5 retina ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) CTTGATGCTT (2) GGGGGGAGGG (5) TGAGTGAAGA 28.3 0.0283 P4.5 retina ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) CTTGATGCTT (2) GCACTGCATT GGGGGGAGGG (5) TGAGTGAAGA 19.9 0.0199 P6.5 retina ACGTTTTCCG AGGAGTGAAG CCCAACACTG (2) CTTGATGCTT (2) GCACTGCATT GCGGACTACC (2) TGAGTGAAGA 25.1 0.0251 P10.5 crx- retina ACGTTTTCCG CCCAACACTG (2) CTTGATGCTT (2) GCACTGCATT TGAGTGAAGA 29.8 0.0298 P10.5 crx+ retina ACGTTTTCCG CCCAACACTG (2) GCACTGCATT GGGGGGAGGG (5) TGAGTGAAGA 19.1 0.0191 Adult retinal CCCAACACTG (2) GCACTGCATT TGAGTGAAGA 5.7 0.0057 ONL GGGGGGAGGG (5) 1.9 0.0019