| Library | Tag (Other Genes) | Normalized Count | % in library | 
| P8 Cb GC | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CCTGAAGCTG (3)
 CTGCTTTCCC (2)
 GATCAACAGG
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 225.1 | 0.2251 | 
| Cb medulloblastoma | AAAAAAAAAA (2) ATGAAAAAAA (2)
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 823.2 | 0.8232 | 
| P8 GC+1d culture | AAAAAAAAAA (2) ATGAAAAAAA (2)
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 214.6 | 0.2146 | 
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ATGAAAAAAA (2)
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 286.9 | 0.2869 | 
| 3T3 fibroblasts | AAAAAAAAAA (2) CACAGTAACA
 GTGCCAGAAA
 
 | 35 | 0.035 | 
| E15 cortex | AAAAAAAAAA (2) TTCAAGAAGA
 
 | 222.7 | 0.2227 | 
| P1 cortex | AAAAAAAAAA (2) CCTGAAGCTG (3)
 CTGCTTTCCC (2)
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 272.6 | 0.2726 | 
| Hypothalamus | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CACAGTAACA
 CTGCTTTCCC (2)
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 137.6 | 0.1376 | 
| E12.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CTGCTTTCCC (2)
 GTGCCAGAAA
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 148.4 | 0.1484 | 
| E14.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CACAGTAACA
 GATCAACAGG
 TTCAAGAAGA
 
 | 111 | 0.111 | 
| E16.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CACAGTAACA
 CTGCTTTCCC (2)
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 61.5 | 0.0615 | 
| E18.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CCTGAAGCTG (3)
 CTGCTTTCCC (2)
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 396.5 | 0.3965 | 
| P0.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 TTCAAGAAGA
 
 | 125.6 | 0.1256 | 
| P2.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CCTGAAGCTG (3)
 CTGCTTTCCC (2)
 GATCAACAGG
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 346.8 | 0.3468 | 
| P4.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 293.3 | 0.2933 | 
| P6.5 retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CCTGAAGCTG (3)
 GTGCCAGAAA
 TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 285.2 | 0.2852 | 
| P10.5 crx- retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CCTGAAGCTG (3)
 GTGCCAGAAA
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 54.1 | 0.0541 | 
| P10.5 crx+ retina | AAAAAAAAAA (2) ATGAAAAAAA (2)
 CACAGTAACA
 CCTGAAGCTG (3)
 TGCCGTACTA (2)
 TTCAAGAAGA
 
 | 109.5 | 0.1095 | 
| Adult retinal | AAAAAAAAAA (2) CCTGAAGCTG (3)
 CTGCTTTCCC (2)
 GTGCCAGAAA
 TTGGAAAAAA (3)
 
 | 66.8 | 0.0668 | 
| ONL | AAAAAAAAAA (2) TTCAAGAAGA
 TTGGAAAAAA (3)
 
 | 107.2 | 0.1072 |