| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AACACCTTGG (2) ATAATGGTGT
| 4.9 | 0.0049 |
| Cb medulloblastoma | CCTACTTAAA TCCTGGAGTC (2)
| 4.6 | 0.0046 |
| P8 GC+1d culture | AACACCTTGG (2) AAGAGAAGAG (2) ATAATGGTGT CCTACTTAAA
| 9.1 | 0.0091 |
| P8 GC+SHH+1d culture | AAGAGAAGAG (2) ATAATGGTGT CTGAAACCAG (2) TCCTGGAGTC (2)
| 5.9 | 0.0059 |
| 3T3 fibroblasts | ATAATGGTGT
| 3.5 | 0.0035 |
| E15 cortex | AAGAGAAGAG (2)
| 4.9 | 0.0049 |
| P1 cortex | AAGAGAAGAG (2)
| 9.1 | 0.0091 |
| Hypothalamus | CTGAAACCAG (2) TCCTGGAGTC (2)
| 3.6 | 0.0036 |
| E12.5 retina | ATAATGGTGT GCTGCTTGCC TCCTGGAGTC (2)
| 9.5 | 0.0095 |
| E14.5 retina | ATAATGGTGT TCCTGGAGTC (2)
| 3.6 | 0.0036 |
| E16.5 retina | AACACCTTGG (2) ATAATGGTGT ATTACGCCAA TCCTGGAGTC (2)
| 16.3 | 0.0163 |
| E18.5 retina | ATAATGGTGT
| 3.6 | 0.0036 |
| P0.5 retina | AAGAGAAGAG (2) ATTACGCCAA
| 5.9 | 0.0059 |
| P2.5 retina | AAGAGAAGAG (2) CTGAAACCAG (2)
| 3.6 | 0.0036 |
| P4.5 retina | ATAATGGTGT
| 2 | 0.002 |
| P6.5 retina | AAGAGAAGAG (2) ATAATGGTGT TCCTGGAGTC (2)
| 5.1 | 0.0051 |
| P10.5 crx- retina | ATAATGGTGT GCTGCTTGCC TCCTGGAGTC (2)
| 5.7 | 0.0057 |
| P10.5 crx+ retina | ATAATGGTGT CCTACTTAAA GCTGCTTGCC TCCTGGAGTC (2)
| 9.5 | 0.0095 |
| Adult retinal | AAGAGAAGAG (2) ATAATGGTGT ATTACGCCAA
| 11.2 | 0.0112 |
| ONL | AACACCTTGG (2) ATAATGGTGT
| 3.8 | 0.0038 |