| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GATTTCTTTG (4) GTGCAGGAGG (2) TCAGTCCTTT (2)
| 6.5 | 0.0065 |
| Cb medulloblastoma | CCAACACTCA (2) GTCTCTGCAT TCAGTCCTTT (2)
| 13.8 | 0.0138 |
| P8 GC+1d culture | GATTTCTTTG (4) GTGCAGGAGG (2) TAGAGCTGTC (2) TCAGTCCTTT (2)
| 14.8 | 0.0148 |
| P8 GC+SHH+1d culture | GATTTCTTTG (4) GTCTCTGCAT TCAGTCCTTT (2)
| 5.9 | 0.0059 |
| 3T3 fibroblasts | GTGCAGGAGG (2)
| 3.5 | 0.0035 |
| E15 cortex | CCAACACTCA (2) GTGCAGGAGG (2)
| 19.7 | 0.0197 |
| Hypothalamus | GTGCAGGAGG (2) TAATGAACTT (2) TAGAGCTGTC (2) TCAGTCCTTT (2)
| 9 | 0.009 |
| E12.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2)
| 5.7 | 0.0057 |
| E14.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2) TAATGAACTT (2)
| 18.2 | 0.0182 |
| E16.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2) TAATGAACTT (2)
| 14.4 | 0.0144 |
| E18.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2)
| 9.1 | 0.0091 |
| P0.5 retina | GATTTCTTTG (4) TAGAGCTGTC (2)
| 7.9 | 0.0079 |
| P2.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2) TAATGAACTT (2) TAGAGCTGTC (2)
| 8.9 | 0.0089 |
| P4.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2)
| 4 | 0.004 |
| P6.5 retina | GATTTCTTTG (4) GTGCAGGAGG (2)
| 6.7 | 0.0067 |
| P10.5 crx- retina | GTCTCTGCAT
| 3.7 | 0.0037 |
| P10.5 crx+ retina | GATTTCTTTG (4) GTCTCTGCAT GTGCAGGAGG (2)
| 7.6 | 0.0076 |
| Adult retinal | GTGCAGGAGG (2)
| 5.6 | 0.0056 |
| ONL | GTGCAGGAGG (2)
| 3.8 | 0.0038 |