| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TAAAAAAGCA (3) TATTGACTTA TGGCTGTTGC TGGGAGGGAT
| 14.6 | 0.0146 |
| Cb medulloblastoma | AGAGAGAGCA (3) GGAAACCCTG TAAAAAAGCA (3)
| 6.9 | 0.0069 |
| P8 GC+1d culture | GGAAACCCTG TAAAAAAGCA (3) TATTGACTTA TGGCTGTTGC
| 6.8 | 0.0068 |
| P8 GC+SHH+1d culture | TATTGACTTA TGGCTGTTGC
| 10.6 | 0.0106 |
| E15 cortex | AGAGAGAGCA (3)
| 4.9 | 0.0049 |
| P1 cortex | AGAGAGAGCA (3) TAAAAAAGCA (3) TGGCTGTTGC
| 13.5 | 0.0135 |
| E12.5 retina | TATTGACTTA TGGCTGTTGC
| 7.5 | 0.0075 |
| E14.5 retina | TATTGACTTA TGGCTGTTGC
| 7.3 | 0.0073 |
| E16.5 retina | TATTGACTTA TGGCTGTTGC TGGGAGGGAT
| 16.2 | 0.0162 |
| E18.5 retina | GGAAACCCTG TATTGACTTA
| 5.4 | 0.0054 |
| P0.5 retina | TATTGACTTA TGGCTGTTGC
| 13.7 | 0.0137 |
| P2.5 retina | TAAAAAAGCA (3) TATTGACTTA TGGCTGTTGC
| 10.6 | 0.0106 |
| P4.5 retina | TATTGACTTA TGGCTGTTGC
| 4 | 0.004 |
| P6.5 retina | GGAAACCCTG TAAAAAAGCA (3) TATTGACTTA TGGCTGTTGC TGGGAGGGAT
| 26.7 | 0.0267 |
| P10.5 crx- retina | GGAAACCCTG TAAAAAAGCA (3) TATTGACTTA TGGCTGTTGC
| 13 | 0.013 |
| P10.5 crx+ retina | GGAAACCCTG
| 3.8 | 0.0038 |
| Adult retinal | GGAAACCCTG TATTGACTTA TGGCTGTTGC
| 7.5 | 0.0075 |
| ONL | GGAAACCCTG TAAAAAAGCA (3) TGGCTGTTGC
| 5.7 | 0.0057 |