| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAGCCTTTGT (2) ATTTAAAAAA (3)
| 6.5 | 0.0065 |
| Cb medulloblastoma | ATTTAAAAAA (3)
| 2.3 | 0.0023 |
| P8 GC+1d culture | AAGCCTTTGT (2) ATGAGAATGG (2) ATTTAAAAAA (3)
| 3.3 | 0.0033 |
| P8 GC+SHH+1d culture | AAAGTGGGTT AAGCCTTTGT (2) ATGAGAATGG (2) ATTTAAAAAA (3)
| 4.8 | 0.0048 |
| 3T3 fibroblasts | AAGCCTTTGT (2)
| 21 | 0.021 |
| E15 cortex | AAGCCTTTGT (2)
| 4.9 | 0.0049 |
| P1 cortex | ATTTAAAAAA (3)
| 9.1 | 0.0091 |
| Hypothalamus | AAAGTGGGTT ATTTAAAAAA (3)
| 3.6 | 0.0036 |
| E12.5 retina | AAGCCTTTGT (2) ATTTAAAAAA (3)
| 3.8 | 0.0038 |
| E14.5 retina | AAGCCTTTGT (2) ATTTAAAAAA (3)
| 5.4 | 0.0054 |
| E16.5 retina | AAGCCTTTGT (2)
| 3.6 | 0.0036 |
| E18.5 retina | ATTTAAAAAA (3)
| 1.8 | 0.0018 |
| P0.5 retina | AAGCCTTTGT (2) TGGGTGTCCA
| 5.9 | 0.0059 |
| P2.5 retina | AAGCCTTTGT (2)
| 1.8 | 0.0018 |
| P4.5 retina | ATTTAAAAAA (3) TGGGTGTCCA
| 6 | 0.006 |
| P6.5 retina | AAGCCTTTGT (2) ATTTAAAAAA (3)
| 5 | 0.005 |
| P10.5 crx- retina | AAAGTGGGTT AAGCCTTTGT (2) ATGAGAATGG (2)
| 27.9 | 0.0279 |
| P10.5 crx+ retina | ATTTAAAAAA (3) TGGGTGTCCA
| 3.8 | 0.0038 |
| Adult retinal | AAGCCTTTGT (2)
| 1.9 | 0.0019 |
| ONL | AAGCCTTTGT (2) ATTTAAAAAA (3)
| 3.8 | 0.0038 |