Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.287982	C1d	nuclear DNA binding protein	11		57316
Gene Ontology	DNA binding | ligand-dependent nuclear receptor interactor activity | negative regulation of transcription | protein binding | receptor activity | transcription corepressor activity | transcriptional repressor complex
Human Homolog	C1D[nuclear DNA-binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGCTTTATA CGTTTGTAGA (2) TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 24.4 0.0244 Cb medulloblastoma ATGCTTTATA CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTTTCAAAAA (3) 34.6 0.0346 P8 GC+1d culture CGTTTGTAGA (2) TGGTTGTCTA TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 61.6 0.0616 P8 GC+SHH+1d culture TGGTTGTCTA TTATTAAAAT (3) TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 56.2 0.0562 3T3 fibroblasts CGTTTGTAGA (2) TTTTCAAAAA (3) 7 0.007 P1 cortex TTATTAAAAT (3) 13.6 0.0136 Hypothalamus CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 38 0.038 E12.5 retina CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 20.8 0.0208 E14.5 retina CGTTTGTAGA (2) TATAAATTTA TGGTTGTCTA TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 38.2 0.0382 E16.5 retina ATGCTTTATA TTATTAAAAT (3) TTCCATTTAA TTTCTGTGAT (2) 27.2 0.0272 E18.5 retina ATGCTTTATA CGTTTGTAGA (2) TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 52.7 0.0527 P0.5 retina TTATTAAAAT (3) TTCCATTTAA 7.9 0.0079 P2.5 retina CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA TTGAACTAAC TTTCTGTGAT (2) TTTTCAAAAA (3) 28.4 0.0284 P4.5 retina TATAAATTTA TGGTTGTCTA TTATTAAAAT (3) TTCCATTTAA TTGAACTAAC 39.7 0.0397 P6.5 retina CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA 36.7 0.0367 P10.5 crx- retina ATGCTTTATA CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 28 0.028 P10.5 crx+ retina ATGCTTTATA CGTTTGTAGA (2) TTATTAAAAT (3) TTCCATTTAA TTTCTGTGAT (2) 22.9 0.0229 Adult retinal CGTTTGTAGA (2) TATAAATTTA TTATTAAAAT (3) TTCCATTTAA TTTCTGTGAT (2) TTTTCAAAAA (3) 16.9 0.0169 ONL ATGCTTTATA CGTTTGTAGA (2) TTATTAAAAT (3) TTCCATTTAA TTTTCAAAAA (3) 17.2 0.0172