| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAATAAATGT (3) AAATAAATTT (2) AAATAATGTA (3) GCCTCCCAAT
| 21.3 | 0.0213 |
| Cb medulloblastoma | AAATAAATGT (3) AAATAATGTA (3) ATGAAATAAA (2)
| 25.4 | 0.0254 |
| P8 GC+1d culture | AAATAAATGT (3) AAATAAATTT (2) AAATAATGTA (3) ATGAAATAAA (2)
| 11.3 | 0.0113 |
| P8 GC+SHH+1d culture | AAATAAATGT (3) AAATAAATTT (2) ATGAAATAAA (2) GCCTCCCAAT
| 11.7 | 0.0117 |
| 3T3 fibroblasts | AAATAATGTA (3)
| 3.5 | 0.0035 |
| Hypothalamus | AAATAAATGT (3) AAATAATGTA (3) ATGAAATAAA (2)
| 32.5 | 0.0325 |
| E12.5 retina | AAATAAATGT (3) AAATAATGTA (3) GCCTCCCAAT
| 9.4 | 0.0094 |
| E14.5 retina | AAATAAATGT (3) AAATAAATTT (2) AAATAATGTA (3) ATGAAATAAA (2)
| 12.7 | 0.0127 |
| E16.5 retina | AAATAAATGT (3) ATGAAATAAA (2)
| 10.9 | 0.0109 |
| E18.5 retina | AAATAAATGT (3) AAATAAATTT (2)
| 12.7 | 0.0127 |
| P0.5 retina | GAGAAGTTTG (2)
| 2 | 0.002 |
| P2.5 retina | AAATAAATGT (3) AAATAAATTT (2) ATGAAATAAA (2) GCCTCCCAAT
| 10.6 | 0.0106 |
| P4.5 retina | AAATAAATGT (3) AAATAAATTT (2) ATGAAATAAA (2) GCCTCCCAAT
| 14 | 0.014 |
| P6.5 retina | AAATAAATGT (3) AAATAATGTA (3) ATGAAATAAA (2)
| 13.3 | 0.0133 |
| P10.5 crx- retina | AAATAAATGT (3) AAATAAATTT (2)
| 5.6 | 0.0056 |
| P10.5 crx+ retina | AAATAAATGT (3) ACGTTTGTGA (2) ATGAAATAAA (2) GCCTCCCAAT
| 15.3 | 0.0153 |
| Adult retinal | AAATAAATGT (3) AAATAATGTA (3) ACGTTTGTGA (2) GAGAAGTTTG (2)
| 9.4 | 0.0094 |
| ONL | AAATAAATGT (3)
| 3.8 | 0.0038 |