| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 60.4 | 0.0604 |
| Cb medulloblastoma | CTGGAAGAGG (2) TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 124.9 | 0.1249 |
| P8 GC+1d culture | CAGTGTGTTC GAAATAGAAG (3) TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 85.5 | 0.0855 |
| P8 GC+SHH+1d culture | CAGTGTGTTC TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 114.7 | 0.1147 |
| 3T3 fibroblasts | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 14 | 0.014 |
| E15 cortex | CTGGAAGAGG (2) TAAAAAAAAA (3) TTCCTGTGCC (2)
| 19.7 | 0.0197 |
| P1 cortex | CTGGAAGAGG (2) TAAAAAAAAA (3) TGACATCTCA
| 63.6 | 0.0636 |
| Hypothalamus | CAGTGTGTTC CTGGAAGAGG (2) GAAATAGAAG (3) TAAAAAAAAA (3) TGACATCTCA TGGGCTGCAA TTCCTGTGCC (2)
| 50.6 | 0.0506 |
| E12.5 retina | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 32 | 0.032 |
| E14.5 retina | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 51 | 0.051 |
| E16.5 retina | TAAAAAAAAA (3) TTCCTGTGCC (2)
| 38 | 0.038 |
| E18.5 retina | CAGTGTGTTC TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 116.3 | 0.1163 |
| P0.5 retina | CAGTGTGTTC CTGGAAGAGG (2) TAAAAAAAAA (3) TGACATCTCA TGGGCTGCAA TTCCTGTGCC (2)
| 59 | 0.059 |
| P2.5 retina | CAGTGTGTTC TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 103.9 | 0.1039 |
| P4.5 retina | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 128.8 | 0.1288 |
| P6.5 retina | CAGTGTGTTC TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 78.4 | 0.0784 |
| P10.5 crx- retina | TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 14.9 | 0.0149 |
| P10.5 crx+ retina | CTGGAAGAGG (2) TAAAAAAAAA (3) TGACATCTCA TGGGCTGCAA TTCCTGTGCC (2)
| 46.1 | 0.0461 |
| Adult retinal | CAGTGTGTTC CTGGAAGAGG (2) TAAAAAAAAA (3) TGACATCTCA TTCCTGTGCC (2)
| 39 | 0.039 |
| ONL | CAGTGTGTTC GAAATAGAAG (3) TAAAAAAAAA (3) TGACATCTCA
| 36.3 | 0.0363 |