| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2)
| 210.5 | 0.2105 |
| Cb medulloblastoma | AAAAAAAAAA (2) ACTCTCTTCA (3) GCATTTATTT
| 809.3 | 0.8093 |
| P8 GC+1d culture | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2)
| 210 | 0.21 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2) GCATTTATTT
| 289.3 | 0.2893 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2) GATGAGATTG (2)
| 217.7 | 0.2177 |
| P1 cortex | AAAAAAAAAA (2) ACTCTCTTCA (3) GCATTTATTT
| 254.4 | 0.2544 |
| Hypothalamus | AAAAAAAAAA (2) ACTCTCTTCA (3)
| 130.4 | 0.1304 |
| E12.5 retina | AAAAAAAAAA (2) GATGAGATTG (2)
| 140.8 | 0.1408 |
| E14.5 retina | AAAAAAAAAA (2) ACTCTCTTCA (3)
| 103.8 | 0.1038 |
| E16.5 retina | AAAAAAAAAA (2) ACTCTCTTCA (3) ATTACGCCAA GATGAGATTG (2)
| 54.3 | 0.0543 |
| E18.5 retina | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2) GCATTTATTT
| 387.4 | 0.3874 |
| P0.5 retina | AAAAAAAAAA (2) ATTACGCCAA GATGAGATTG (2)
| 121.8 | 0.1218 |
| P2.5 retina | AAAAAAAAAA (2) GATGAGATTG (2)
| 334.4 | 0.3344 |
| P4.5 retina | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2)
| 291.3 | 0.2913 |
| P6.5 retina | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2)
| 270.2 | 0.2702 |
| P10.5 crx- retina | AAAAAAAAAA (2) ACTCTCTTCA (3) GCATTTATTT
| 57.6 | 0.0576 |
| P10.5 crx+ retina | AAAAAAAAAA (2) ACTCTCTTCA (3)
| 98 | 0.098 |
| Adult retinal | AAAAAAAAAA (2) ACTCTCTTCA (3) ATTACGCCAA GATGAGATTG (2)
| 66.7 | 0.0667 |
| ONL | AAAAAAAAAA (2) ACTCTCTTCA (3) GATGAGATTG (2)
| 111 | 0.111 |