| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAGAGAAAAA (6) AAGAGAAAAC (2) AAGAGAAACC (2) AGGGAGAGGA GAGCGGGAGC (3)
| 21.3 | 0.0213 |
| Cb medulloblastoma | AAGAGAAAAA (6) AAGAGAAACC (2) GGAGGGCAGA (3)
| 136.4 | 0.1364 |
| P8 GC+1d culture | AAAGAGAAAA (3) AAGAGAAAAA (6) AAGAGAAACC (2) AGGGAGAGGA AGGGTGAGGA (4) GAGCGGGAGC (3) GGTCCCCACA
| 22.8 | 0.0228 |
| P8 GC+SHH+1d culture | AAGAGAAAAA (6) AAGAGAAACC (2) AGGGAGAGGA AGGGTGAGGA (4) GAGCGGGAGC (3) GGAGGGCAGA (3)
| 17.6 | 0.0176 |
| 3T3 fibroblasts | AGGGTGAGGA (4) GAGCGGGAGC (3)
| 28 | 0.028 |
| E15 cortex | AGGGAGAGGA AGGGTGAGGA (4)
| 19.8 | 0.0198 |
| P1 cortex | AGGGTGAGGA (4)
| 13.6 | 0.0136 |
| Hypothalamus | AAGAGAAACC (2) AGGGAGAGGA TGGACAACCC (2)
| 103.2 | 0.1032 |
| E12.5 retina | GGCAGGGCAG (2)
| 1.9 | 0.0019 |
| E14.5 retina | AGGGAGAGGA GAGCGGGAGC (3) GGAGGGCAGA (3) GGTCCCCACA
| 23.6 | 0.0236 |
| E16.5 retina | AAGAGAAAAA (6) AGGGAGAGGA GGTCCCCACA
| 10.8 | 0.0108 |
| E18.5 retina | AAAGAGAAAA (3) AAGAGAAAAA (6) AAGAGAAACC (2) AGGGAGAGGA GGCAGGGCAG (2)
| 9 | 0.009 |
| P0.5 retina | AAGAGAAACC (2) AGGGAGAGGA AGGGTGAGGA (4)
| 13.8 | 0.0138 |
| P2.5 retina | AAGAGAAACC (2)
| 1.8 | 0.0018 |
| P4.5 retina | AAGAGAAAAA (6) AAGAGAAACC (2) AGGGAGAGGA
| 6 | 0.006 |
| P6.5 retina | AAGAGAAACC (2) AGGGAGAGGA AGGGTGAGGA (4) GGTCCCCACA
| 25 | 0.025 |
| P10.5 crx- retina | AAGAGAAAAA (6) AAGAGAAACC (2) AGGGAGAGGA AGGGTGAGGA (4) TGGACAACCC (2)
| 57.8 | 0.0578 |
| P10.5 crx+ retina | AAAGAGAAAA (3) AAGAGAAACC (2) GGAGGGCAGA (3)
| 38.4 | 0.0384 |
| Adult retinal | AAAGAGAAAA (3) AAGAGAAAAC (2) AAGAGAAACC (2) GAGCGGGAGC (3) GGCAGGGCAG (2)
| 37.1 | 0.0371 |
| ONL | AAGAGAAAAC (2) AAGAGAAACC (2) AGGGTGAGGA (4)
| 9.5 | 0.0095 |