Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.295397	Depdc6	DEP domain containing 6	15	15 6.7 cM	97998
Gene Ontology	intracellular signaling cascade
Human Homolog	DEPDC6[DEP domain containing 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAATAAATGT (3) CCTCACTGGT (2) TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG TTGGTAATTT 29.4 0.0294 Cb medulloblastoma AAATAAATGT (3) CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TGTCTAACAA 20.7 0.0207 P8 GC+1d culture AAATAAATGT (3) CAGCTAATTA CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG TGTCTAACAA 26.1 0.0261 P8 GC+SHH+1d culture AAATAAATGT (3) CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG TGTCTAACAA 23.4 0.0234 3T3 fibroblasts CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TGAGCCCCTG 38.5 0.0385 E15 cortex CCTCACTGGT (2) TAGCCCAGGC (2) TCTCGAAAAA 39.5 0.0395 P1 cortex CCTCACTGGT (2) 9.1 0.0091 Hypothalamus AAATAAATGT (3) CAGCTAATTA CCTCACTGGT (2) TAGCCCAGGC (2) TGAGCCCCTG TGTCTAACAA TTGGTAATTT 41.5 0.0415 E12.5 retina AAATAAATGT (3) CCACATCCAG TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG 22.6 0.0226 E14.5 retina AAATAAATGT (3) CACACCACAC CCTCACTGGT (2) TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG TTGGTAATTT 31 0.031 E16.5 retina AAATAAATGT (3) CCTCACTGGT (2) TAGCCCAGGC (2) TTGGTAATTT 27.1 0.0271 E18.5 retina AAATAAATGT (3) CCACATCCAG CCTCACTGGT (2) TAGCCCAGGC (2) TTGGTAATTT 25.4 0.0254 P0.5 retina CCTCACTGGT (2) TAGCCCAGGC (2) 11.8 0.0118 P2.5 retina AAATAAATGT (3) CACACCACAC CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TCTCGAAAAA TGAGCCCCTG TTGGTAATTT 24.8 0.0248 P4.5 retina AAATAAATGT (3) TAGCCCAGGC (2) TCTCGAAAAA TTGGTAATTT 10 0.01 P6.5 retina AAATAAATGT (3) CACACCACAC CCTGTCTCCC (2) TAGCCCAGGC (2) 16.7 0.0167 P10.5 crx- retina AAATAAATGT (3) CCACATCCAG CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TGAGCCCCTG 26.1 0.0261 P10.5 crx+ retina AAATAAATGT (3) CAGCTAATTA CCTCACTGGT (2) TAGCCCAGGC (2) TGAGCCCCTG 21 0.021 Adult retinal AAATAAATGT (3) CCACATCCAG CCTCACTGGT (2) CCTGTCTCCC (2) TAGCCCAGGC (2) TCTCGAAAAA 18.7 0.0187 ONL AAATAAATGT (3) CCACATCCAG TAGCCCAGGC (2) TGAGCCCCTG TTGGTAATTT 19.1 0.0191