| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) AACAATGTGG (2) CACCAAAAGG GACCAGAAGG (3)
| 225 | 0.225 |
| Cb medulloblastoma | AAAAAAAAAA (2) AAAAATGTGG (2) AACAATGTGG (2) CATTAGCAGT GGAGGGGAAA (2)
| 813.9 | 0.8139 |
| P8 GC+1d culture | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) GACCAGAAGG (3)
| 216.8 | 0.2168 |
| P8 GC+SHH+1d culture | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) CACCAAAAGG
| 286.8 | 0.2868 |
| 3T3 fibroblasts | AAAAAAAAAA (2)
| 28 | 0.028 |
| E15 cortex | AAAAAAAAAA (2) AAAAATGTGG (2)
| 227.6 | 0.2276 |
| P1 cortex | AAAAAAAAAA (2) AAAAATGTGG (2)
| 249.9 | 0.2499 |
| Hypothalamus | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) CACCAAAAGG
| 128.6 | 0.1286 |
| E12.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) CATTAGCAGT
| 150.2 | 0.1502 |
| E14.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) GACCAGAAGG (3)
| 101.9 | 0.1019 |
| E16.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) GACCAGAAGG (3)
| 50.7 | 0.0507 |
| E18.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2)
| 383.8 | 0.3838 |
| P0.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2)
| 125.7 | 0.1257 |
| P2.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) CACCAAAAAA
| 337.9 | 0.3379 |
| P4.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2)
| 303.1 | 0.3031 |
| P6.5 retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2)
| 276.8 | 0.2768 |
| P10.5 crx- retina | AAAAAAAAAA (2) AAAAATGTGG (2) AAAATGTGGT (2) AACAATGTGG (2)
| 65.1 | 0.0651 |
| P10.5 crx+ retina | AAAAAAAAAA (2) AAAAATGTGG (2) GACCAGAAGG (3) GGAGGGGAAA (2)
| 115.3 | 0.1153 |
| Adult retinal | AAAAAAAAAA (2) AAAAATGTGG (2) CACCAAAAAA CATTAGCAGT
| 72.3 | 0.0723 |
| ONL | AAAAAAAAAA (2) AAAAATGTGG (2)
| 114.9 | 0.1149 |