Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2965	Rho	rhodopsin	6	6 E3 (6 51.5 cM)	212541
Gene Ontology	G-protein coupled photoreceptor activity | G-protein coupled receptor activity | G-protein coupled receptor protein signaling pathway | integral to membrane | perception of light | photoreceptor outer segment | phototransduction | receptor activity | rhodopsin-like receptor activity | vision
Human Homolog	RHO[rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 12 In Situ Hybridization Images

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SAGE Tags

Total 253 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (2) AAAAGCAAAA AAAGCAAAAA (4) AAAGCCAAAA (2) ACAAGTGCTC CCCAGTTCAC (3) GCCATCTTCC (2) GGTCATCTTC TTTCCTTCAA 257.8 0.2578 Cb medulloblastoma AAAAAAAAAA (2) AAAAGCAAAA AAAGCAAAAA (4) AAAGCAAAAT (3) ACAAGTGCTC GACAAAGTGT (2) GCCATCTTCT (2) GGGACAGAGG (2) GGTCATCTTC TTTCCTTCAA 857.8 0.8578 P8 GC+1d culture AAAAAAAAAA (2) AAAAGCAAAA AAAGCAAAAA (4) AAAGCAAAAT (3) AAAGCCAAAA (2) GAAACTGGGA GATGTCCTCA GCCATCTTCC (2) GCTGCCACAC GGTCATCTTC TTTCCTTCAA 257.7 0.2577 P8 GC+SHH+1d culture AAAAAAAAAA (2) AAAAGCAAAA AAAGCAAAAT (3) ACAAGTGCTC GACAAAGTGT (2) GCCATCTTCC (2) GGTCATCTTC TTTCCTTCAA 337.3 0.3373 3T3 fibroblasts AAAAAAAAAA (2) GACAAAGTGT (2) GCCATCTTCC (2) GCCATCTTCT (2) TCCTCCACCA TTTCCTTCAA 56 0.056 E15 cortex AAAAAAAAAA (2) AAAGCAAAAT (3) GCCATCTTCC (2) GGGCCCTCCT TTTCCTTCAA 232.4 0.2324 P1 cortex AAAAAAAAAA (2) GATGTCCTCA GCCATCTTCC (2) GGGCCCTCCT GGGGACAGAG (2) GGTCATCTTC TTTCCTTCAA 295.3 0.2953 Hypothalamus AAAAAAAAAA (2) AAAGCAAAAT (3) ACAAGTGCTC GCCATCTTCC (2) GCCATCTTCT (2) GCTGCCACAC GGGAACGAAG (5) GGGACAGAGG (2) GGGCCCTCCT GGTCATCTTC TCTGGCTGGA (3) TTTCCTTCAA 191.8 0.1918 E12.5 retina AAAAAAAAAA (2) AAAAGCAAAA AAAGCAAAAA (4) AGGAAGGGGG (2) GACAAAGTGT (2) GCCATCTTCC (2) GCTGCCACAC GGTCATCTTC TTTCCTTCAA 174.7 0.1747 E14.5 retina AAAAAAAAAA (2) AAAGCAAAAA (4) AAAGCAAAAT (3) CAGCATCCCC (2) CAGGCTCCCT GAAACTGGGA GCCATCTTCC (2) GGGAACGAAG (5) GGGACAGAGG (2) GGGCCCTCCT GGTCATCTTC TCTGGCTGGA (3) TCTGGCTGGG TTCGTGGCCT TTTCCTTCAA 141.8 0.1418 E16.5 retina AAAAAAAAAA (2) AAAGCAAAAA (4) AAAGCAAAAT (3) ACAAGTGTCC CAATGGTCAA CCATTTACTC (2) GCCATCTTCC (2) GGTCATCTTC TCCTCCACCA TTCGTGGCCT TTTCCTTCAA 97.6 0.0976 E18.5 retina AAAAAAAAAA (2) AAAGCAAAAA (4) AAAGCAAAAT (3) AGGAAGGGGG (2) CAGGCTCCCT CCCAGTTCAC (3) GCCATCTTCC (2) GGTCATCTTC TTTCCTTCAA 411 0.411 P0.5 retina AAAAAAAAAA (2) AAAAGCAAAA AAACCCCACT AAAGCAAAAT (3) ACAAGTGCTC AGCTGGGACC GACAAAGTGT (2) GCCATCTTCC (2) GGGACAGAGG (2) GGTCATCTTC TTTCCTTCAA 147.5 0.1475 P2.5 retina AAAAAAAAAA (2) AAAGCAAAAT (3) ACAAGTGCTC AGGAAGGGGG (2) CAGCATCCCC (2) GGTCATCTTC TTTCCTTCAA 366.1 0.3661 P4.5 retina AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCAAAAT (3) ACAAGTGCTC ACAAGTGTCC AGCTGGGACC AGGAAGGGGG (2) GACAAAGTGT (2) GCCATCTTCC (2) GGACAGAGGC (3) GGTCATCTTC TTTCCTTCAA 350.9 0.3509 P6.5 retina AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCCAAAA (2) AATTCATTAA (2) ACAAGTGCTC ACAAGTGTCC AGCTGGGACC CAATGGTCAA GACAAAGTGT (2) GGGACAGAGG (2) GGTCATCTTC TCTGGCTGGA (3) TTTCCTTCAA 356.8 0.3568 P10.5 crx- retina AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCAAAAT (3) ACAAGTGCTC ACAAGTGTCC AGCTGGGACC AGGAAGGGGG (2) CAATGGTCAA CCATTTACTC (2) GACAAAGTGT (2) GATGTCCTCA GCCATCTTCC (2) GGGACAGAGG (2) GGGGACAGAG (2) GGTCATCTTC TCCTCCACCA TCTGGCTGGA (3) TTTCCTTCAA 167.5 0.1675 P10.5 crx+ retina AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCAAAAT (3) AATTCATTAA (2) ACAAGTGCTC ACAAGTGTCC AGCTGGGACC AGGAAGGGGG (2) CAGAGTTGGG CAGCATCCCC (2) CAGGCTCCCT GACAAAGTGT (2) GATCCAGTTC GCCATCTTCC (2) GCTGCCACAC GGGACAGAGG (2) GGGGACAGAG (2) GGTCATCTTC TCTGGCTGGA (3) TTGAACAAGC TTTCCTTCAA 788 0.788 Adult retinal AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCAAAAT (3) AATTCATTAA (2) ACAAGTGCTC ACAAGTGTCC ACTCTGCCAG AGCTGGGACC CAATGGTCAA CAGAGTTGGG CCATTTACTC (2) CCCAGTTCAC (3) GACAAAGTGT (2) GATCCAGTTC GATGTCCTCA GCCATCTTCC (2) GCTGCCACAC GGACAGAGGC (3) GGGACAGAGG (2) GGGGACAGAG (2) GGTCATCTTC GTCTTCGGAG (2) TCTCTCAGCC TCTGGCTGGA (3) TCTGGCTGGG TTGAACAAGC TTTCCTTCAA 2070.3 2.0703 ONL AAAAAAAAAA (2) AAACCCCACT AAAGCAAAAA (4) AAAGCAAAAT (3) AATTCATTAA (2) ACAAGTGCTC ACAAGTGTCC ACTCTGCCAG AGCTGGGACC CAGAGTTGGG CAGGCTCCCT CCCAGTTCAC (3) GAAACTGGGA GACAAAGTGT (2) GATCCAGTTC GATGTCCTCA GCCATCTTCC (2) GCTGCCACAC GGACAGAGGC (3) GGGACAGAGG (2) GGGGACAGAG (2) GGTCATCTTC GTCTTCGGAG (2) TCTCTCAGCC TCTGGCTGGA (3) TTGAACAAGC TTTCCTTCAA 2453.4 2.4534