| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG TAAAAAAAAA (3) TCAGAGGTGT (5)
| 171.2 | 0.1712 |
| Cb medulloblastoma | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC TAAAAAAAAA (3) TAGCAGTATG
| 191.9 | 0.1919 |
| P8 GC+1d culture | AAATTGTTGC CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG TAAAAAAAAA (3) TAGCAGTATG TTCCTGCTTT
| 235.1 | 0.2351 |
| P8 GC+SHH+1d culture | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG
| 250.5 | 0.2505 |
| 3T3 fibroblasts | CCCCAGCCAG (3) GAGAACACAC TAAAAAAAAA (3) TAGCAGTATG
| 325.9 | 0.3259 |
| E15 cortex | CCCCAGCCAG (3) TAAAAAAAAA (3)
| 197.9 | 0.1979 |
| P1 cortex | AGGCCCTGGG CCCCAGCCAG (3) TAAAAAAAAA (3) TTGGGTAATC
| 131.7 | 0.1317 |
| Hypothalamus | CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG TCAGAGGTGT (5)
| 121.3 | 0.1213 |
| E12.5 retina | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3)
| 291 | 0.291 |
| E14.5 retina | AAATTGTTGC AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC TAAAAAAAAA (3) TAGCAGTATG
| 295.1 | 0.2951 |
| E16.5 retina | AGGCCCTGGG CCCCAGAGCT CCCCAGCCAG (3) GAGTAGTGTG GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG
| 306 | 0.306 |
| E18.5 retina | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3)
| 294.6 | 0.2946 |
| P0.5 retina | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG
| 241.5 | 0.2415 |
| P2.5 retina | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG TTCCTGCTTT
| 216.5 | 0.2165 |
| P4.5 retina | AGGCCCTGGG CCCCAGAGCT CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG TCAGAGGTGT (5)
| 297.2 | 0.2972 |
| P6.5 retina | AGGCCCTGGG CCCCAGCCAG (3) GAGAACACAC GAGTAGTGTG GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG
| 193.6 | 0.1936 |
| P10.5 crx- retina | CCCCAGAGCT CCCCAGCCAG (3) GAGAACACAC TAAAAAAAAA (3) TAGCAGTATG TCAGAGGTGT (5) TTCCTGCTTT
| 120.7 | 0.1207 |
| P10.5 crx+ retina | CCCCAGCCAG (3) GGGCCTCTGG TAAAAAAAAA (3)
| 109.6 | 0.1096 |
| Adult retinal | CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG TTGGGTAATC
| 105.7 | 0.1057 |
| ONL | CCCCAGCCAG (3) GAGAACACAC GGGCCTCTGG TAAAAAAAAA (3) TAGCAGTATG
| 68.8 | 0.0688 |