| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | GCCTCCTCCC (2)
| 21.2 | 0.0212 |
| Cb medulloblastoma | AAATCCTGTC (2) GCCTCCTCCC (2)
| 20.8 | 0.0208 |
| P8 GC+1d culture | AAATCCTGTC (2) GACTTTCTGG (2) GCCTCCTCCC (2)
| 44.4 | 0.0444 |
| P8 GC+SHH+1d culture | GACCTTCTGG (2) GACTTTCTGG (2) GCCTCCTCCC (2) GGCCAACCTG
| 46.9 | 0.0469 |
| 3T3 fibroblasts | GCCTCCTCCC (2) GGCCAACCTG
| 35 | 0.035 |
| E15 cortex | GACCTTCTGG (2) GCCTCCTCCC (2)
| 64.3 | 0.0643 |
| P1 cortex | AAATCCTGTC (2) GCCTCCTCCC (2)
| 18.1 | 0.0181 |
| Hypothalamus | ATGCTGGAAA (3) GCCTCCTCCC (2)
| 63.4 | 0.0634 |
| E12.5 retina | AAATCCTGTC (2) ATGCTGGACA GCCTCATCCC (2) GCCTCCTCCC (2)
| 62 | 0.062 |
| E14.5 retina | ATGCTGGACA GACCTTCTGG (2) GCCTCATCCC (2) GCCTCCTCCC (2)
| 98.3 | 0.0983 |
| E16.5 retina | ATGCTGGACA GCCTCCTCCC (2)
| 85.1 | 0.0851 |
| E18.5 retina | ATGCTGGACA GCCTCCTCCC (2)
| 87.3 | 0.0873 |
| P0.5 retina | GCCTCCTCCC (2)
| 39.3 | 0.0393 |
| P2.5 retina | AAATCCTGTC (2) ATGCTGGAAA (3) GCCTCCTCCC (2)
| 51.1 | 0.0511 |
| P4.5 retina | GCCTCCTCCC (2) GGCCAACCTG
| 61.4 | 0.0614 |
| P6.5 retina | AAATCCTGTC (2) GCCTCCTCCC (2)
| 36.7 | 0.0367 |
| P10.5 crx- retina | AAATCCTGTC (2) GCCTCCTCCC (2)
| 27.9 | 0.0279 |
| P10.5 crx+ retina | AAATCCTGTC (2) GACTTTCTGG (2) GCCTCATCCC (2) GCCTCCTCCC (2)
| 36.4 | 0.0364 |
| Adult retinal | ATGCTGGAAA (3) GACCTTCTGG (2) GACTTTCTGG (2) GCCTCCTCCC (2)
| 37.2 | 0.0372 |
| ONL | GCCTCCTCCC (2)
| 9.6 | 0.0096 |