Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.298274	Rapgef1	Rap guanine nucleotide exchange factor (GEF) 1	2		107746
Gene Ontology	blood vessel development | cell-cell adhesion | PDGF receptor signaling pathway | protein binding | SH3/SH2 adaptor protein activity | signal transducer activity
Human Homolog	RAPGEF1[Rap guanine nucleotide exchange factor (GEF) 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 53 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAACAAAAC (3) CCTCCCAGTG (2) TGGTCTTTGG 16.3 0.0163 Cb medulloblastoma CCTCCCAGTG (2) 2.3 0.0023 P8 GC+1d culture AATTGGGCAG (2) CCTCCCAGTG (2) GATGTCCTCA 12.5 0.0125 P8 GC+SHH+1d culture AATTGGGCAG (2) AGCTGGGCAG (2) CCTCCCAGTG (2) TGGTCTTTGG 13 0.013 3T3 fibroblasts AATTGGGCAG (2) AGCTGGGCAG (2) 10.5 0.0105 E15 cortex AGCTGGGCAG (2) CCTCCCAGTG (2) 19.8 0.0198 P1 cortex GATGTCCTCA 9.1 0.0091 Hypothalamus CCTCCCAGTG (2) GACAGTTGGG (2) TGGTCTTTGG 9 0.009 E12.5 retina AATTGGGCAG (2) CCTCCCAGTG (2) TGACTGTATA (3) 20.7 0.0207 E14.5 retina AATTGGGCAG (2) CCTCCCAGTG (2) GACAGTTGGG (2) 12.7 0.0127 E16.5 retina CCTCCCAGTG (2) 7.2 0.0072 E18.5 retina CCTCCCAGTG (2) TGGTCTTTGG 7.3 0.0073 P0.5 retina AAAACAAAAC (3) AATTGGGCAG (2) CCTCCCAGTG (2) TGACTGTATA (3) TGGTCTTTGG 17.8 0.0178 P2.5 retina AATTGGGCAG (2) CCTCCCAGTG (2) TGACTGTATA (3) 14.1 0.0141 P4.5 retina CCTCCCAGTG (2) 2 0.002 P6.5 retina AAAACAAAAC (3) AATTGGGCAG (2) CCTCCCAGTG (2) TGGTCTTTGG 11.8 0.0118 P10.5 crx- retina AAAACAAAAC (3) CCTCCCAGTG (2) GATGTCCTCA TGACTGTATA (3) 7.6 0.0076 P10.5 crx+ retina CCTCCCAGTG (2) 5.8 0.0058 Adult retinal CCTCCCAGTG (2) GACAGTTGGG (2) GATGTCCTCA TGACTGTATA (3) TGGTCTTTGG 15 0.015 ONL GATGTCCTCA TGACTGTATA (3) 5.7 0.0057